Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6222 113 4e-20 seq1287 89.7 5e-13 seq214 82.4 8e-11 >seq6222 Length=16261 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | || | | | |||||||| || ||||||||||| Sbjct 794 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 735 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||| || || || || || | | |||| || | ||| || || ||||| Sbjct 734 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 675 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || |||| | ||| | |||||| | | ||| || Sbjct 674 AATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGAC 615 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| ||| | || || |||||||| || || ||||| ||||||||| || Sbjct 614 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 563 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | || | | | |||||||| || |||||||||||| Sbjct 1250 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1191 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || || || || | | |||| || | ||| || || ||||| Sbjct 1190 CAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 1131 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | | ||| | |||||| | | ||| || Sbjct 1130 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAAC 1071 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || |||||||| ||||| ||||| ||||||||| Sbjct 1070 TTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 1022 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || ||||| || | || | | | || || || || |||||||||||| Sbjct 1022 GCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 963 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || || || || | | |||| || | ||| || |||||||| Sbjct 962 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGG 903 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| |||||| || | | || | |||||| | | ||| || Sbjct 902 AATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGAC 843 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | || | || || ||||||| ||||| || || ||||||||| || Sbjct 842 CTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCATGCCT 791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | || | | | || || || || ||||||||||| Sbjct 566 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 507 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||| || || || || || | |||| || | ||| || || ||||| Sbjct 506 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGG 447 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | | || | ||||||| | | ||| || Sbjct 446 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGAC 387 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || |||||||| || || ||||| ||||||||| Sbjct 386 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 338 >seq1287 Length=55868 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || | ||||||||| ||||| || | | Sbjct 31179 GACTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCA 31238 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || | |||||||||||| ||||| || || |||||||| ||| ||| ||| | Sbjct 31239 AAAATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTTGCTTTCACA 31298 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || ||| | | || || || | ||| | ||||| || |||| || || Sbjct 31299 TTCTCTATGGAGTCTGATGGTTCTACTTCTAGCGTGATGGTTTTCCCTGTCAACGTCTTC 31358 Query 138601 ACAAAAATCTGCAT 138614 || ||||| ||||| Sbjct 31359 ACGAAAATTTGCAT 31372 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || ||||| | |||| |||||||||||||| |||||| | || | ||| Sbjct 30932 CAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGATAGCGTTCTTCCGTC 30991 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||||||||||| || | | | || | ||||||||||| ||||| || ||||| || || Sbjct 30992 CTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCCTTATC 31051 Query 138522 GGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| |||| | || | | ||| | || || | | ||| ||||| | || | | Sbjct 31052 -TTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACCTCCAGAGTAATAG 31110 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || | ||| || || ||||| ||||| Sbjct 31111 TCTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 >seq214 Length=1293776 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| ||||| | ||| || ||||||||||| ||| |||| || ||||||||| Sbjct 79365 TACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAGGTTCTGCTGATTG 79306 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 153761 || || | ||||| | ||||||| | |||||||| || ||| ||||| |||| Sbjct 79305 CTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCCGTCTGCGAC 79246 Query 153762 TCGACGAT 153769 |||| ||| Sbjct 79245 TCGATGAT 79238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495999573229680