Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq278 132 7e-26 seq123 129 8e-25 >seq278 Length=756766 Score = 132 bits (146), Expect = 7e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || || || || | |||||| ||| |||| || || || || ||||| | | || ||| Sbjct 339268 GTAGTCTGGAATAGCTGCTCATCATCCCACTCTGGATGCTCTTGTTTCAAGATGTCACAG 339209 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || || |||||||||||||||||||| || || |||||||||| ||||| || || ||| Sbjct 339208 ACTCTATTGTGTTCTCTCAGCCATATTGTTGCATACATCATTAGGCCCGGGACCAAGCCA 339149 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | || || | ||| |||| | || || || | || | ||| | ||| Sbjct 339148 AACACCTCCTGGCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGATAGATCATC 339089 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | | | || || || || || || || ||||||||||| || ||||| | ||| Sbjct 339088 TCCGCTTGAGTATCCTTCACTGTCGGTGGATACATTTCTCCATCAATCATCTG 339036 Score = 96.9 bits (106), Expect = 5e-15 Identities = 199/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 341246 GGAAAGCAGTGAAAGGACAACCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 341187 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || || || |||||||| || ||||| ||| | || | Sbjct 341186 TATTGATTATTTCAAACCCCACTCTTCCACCAAAGGTGCTTGGCTTCCAATACTCAGGAG 341127 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||| || || |||| || ||||| | ||| || || || || | || | || Sbjct 341126 AGCATATTGTATTTCCCATCAGTCCTTTTAGGGAGAATGGTGCACCAATTTCCACCATTG 341067 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || | || ||||| || | | ||| | || || || | Sbjct 341066 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTACAAGAAGGCCTGGATACAGCTCCA 341007 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||| | || ||||| || || || || ||| Sbjct 341006 TAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCCCCT 340951 Score = 89.7 bits (98), Expect = 7e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | || || | | || |||| | ||| ||| ||||| Sbjct 340457 ATAGAGTTGTTGTAGAGAAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGAAAAGTG 340398 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||| | || | |||||| |||| || |||||||| || || || |||||||||||| Sbjct 340397 TCAGGTAGAAGTGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 340338 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 340337 TATTGAAAACGCTGGT--TGAACAGAAGCTCAGGATCAAACTTCAGTTTGAAGTGGTAGC 340280 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | ||||| ||||| | | || | || || || ||||| || || Sbjct 340279 CACTCAAGTGCTGCACATAATCTTCAATAACTATCTTTATTGTTTCTCCTGT 340228 >seq123 Length=2623908 Score = 129 bits (142), Expect = 8e-25 Identities = 208/299 (70%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| || ||||||| |||||| ||| || | ||| || | | || | Sbjct 1915395 GGAACGCCGCGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTTCAGCGACGCTG 1915336 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | |||||||| || || || | ||||| ||||| ||||| ||||||||| |||||| Sbjct 1915335 TCTTCACGATCTCGAAGCCGGTCGCTCCGCCAAAGGTACTGGGCTTCCAGTACTCCGGGG 1915276 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| | | || || |||| |||||||||||| || | ||| | |||| Sbjct 1915275 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGGGAAAACGGAGCGCCAATCTCCACCATGC 1915216 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || ||||| ||| | |||| | ||||| || | | || || | || | || | Sbjct 1915215 TTTCCCCGAAAATGCCGTCGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAACTCCA 1915156 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| || | ||| ||||| || | |||| ||| || || |||||| ||| ||| || Sbjct 1915155 GAGCGTCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTGCA 1915097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723344704604600