Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1099 138 1e-27 >seq1099 Length=64186 Score = 138 bits (152), Expect = 1e-27 Identities = 302/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 116137 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 |||| ||| |||| ||||| ||||| |||| || || || ||||| ||| Sbjct 43204 GCCAGCTCGCAGCTGGCCTCAAGGGCAGCGTAGTAAATGCATTCGAAAATATTCCTGTTC 43263 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAG 116255 | | | |||| ||| || ||||| | || || ||| || || || |||| || || Sbjct 43264 AATCTCCTGGCTTCGGCGCTGTCAAAGG-GATACCGCAGCATCATGAACGCATCAGCAAG 43322 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 || || ||||| ||||| || ||||| || ||||| || ||| || || | || Sbjct 43323 GCCCTGAACACCCAGGCCGATAGGGCGGTGCCTCATGTTGCTCTTGCGCGCTTCTTGGAC 43382 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 |||||| | ||||| |||||||| | || | || || | || || || | Sbjct 43383 AGGATAATAGTTCCTGTCGATAACGCAGTTCAAGTTGCGCGTCGCGACTTTGACGACAGC 43442 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 | | || ||||| | ||| | || || || ||| |||||||||||| | Sbjct 43443 TTTTAATTTGTCGTAGTTGAAAGTTTTCGTTTCGCGATCAACAAACTTAGGAAGGGAAAG 43502 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 ||||||| || ||||||| | || ||||| || ||||| | |||||| ||||| Sbjct 43503 GGACGCCAAGTTGCACACAGCGACTTCGTCCTTGCTCGTATACTCCACAATTTCTGTACA 43562 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 ||||| || ||||||||||||| ||||||||| || ||| | || || ||||| Sbjct 43563 TAAATTGCTACCTTTAATGGTGCCCAGGTTCTTTTGGTTGCTTTTTCTATTGCAGGCATC 43622 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 |||||| | ||| || |||||||| ||||| Sbjct 43623 CTTGTACAACATGTACGGCGTCCCTGTCTC 43652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613182278918040