Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-29 seq6222 140 4e-28 seq1287 122 1e-22 >seq1 Length=14292544 Score = 143 bits (158), Expect = 3e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | |||| || ||||||| || |||||| ||||| |||||||||| Sbjct 9556407 TGCCTCCCCTCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 9556466 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | |||||| |||| | Sbjct 9556467 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGG 9556526 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | |||||||| | || | Sbjct 9556527 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGA 9556586 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 | |||| |||||||| ||||| || || || || || ||||| ||||| |||| Sbjct 9556587 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTTGC 9556640 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||||| || |||||| ||||| ||||||||||| || |||||| | Sbjct 9555965 CGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 9556024 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| | |||||| |||| || | || |||||| Sbjct 9556025 TCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTG 9556084 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| || | ||||| |||| |||||| Sbjct 9556085 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATG 9556144 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || || ||||| ||||| Sbjct 9556145 GTCTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 9556179 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | |||| |||||| |||| || |||||| ||||| ||||||||||| Sbjct 9556181 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 9556240 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||||||||| || || |||| | |||||| || | || Sbjct 9556241 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGG 9556300 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 9556301 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 9556360 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || |||| || || || ||||| ||||| Sbjct 9556361 TCCAGAGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 9556407 >seq6222 Length=16261 Score = 140 bits (154), Expect = 4e-28 Identities = 183/252 (73%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||||| |||||| |||| || || || ||||| |||||||| | Sbjct 567 TGCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 508 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| |||| || ||||||||||| ||||| |||| | |||||| |||| | Sbjct 507 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAG 448 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| |||||| ||| | || | | |||||||| | || | Sbjct 447 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGA 388 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC-AAA 46603 | || | |||||||| ||||| ||||| || || |||||||| ||||| || || || Sbjct 387 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTTAACTGAA 328 Query 46604 CAACACGCCGAA 46615 ||||| | ||| Sbjct 327 GAACACACAGAA 316 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||||| |||||| |||| || |||||| ||||| |||||||| | Sbjct 795 TGCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 736 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| |||| || ||||||||||| || || |||| | |||||| |||| | Sbjct 735 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAG 676 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| |||||| ||| | | | | ||||| || | || | Sbjct 675 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGA 616 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||||||| ||||| ||||| || || |||||||| ||||| Sbjct 615 CCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 567 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || |||||||| || | ||||| |||||| |||| || |||||| ||||| |||||| Sbjct 1255 TAATTGCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAG 1196 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 ||||| || ||||| | || || ||||||||||| || || |||| | |||||| ||| Sbjct 1195 TCGGACAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCG 1136 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540 | || | || || ||||| |||||| ||| | | | | ||||| || | Sbjct 1135 GGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGC 1076 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | |||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 1075 TCAACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1023 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||||| |||||| |||| || || || ||||| |||||||||| Sbjct 1023 TGCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGG 964 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 963 ACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAG 904 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| ||| || ||| | || | | ||||| || | || | Sbjct 903 GAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGA 844 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||| || ||||| |||| ||||| || ||||| ||||| Sbjct 843 CCTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 795 >seq1287 Length=55868 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | || |||| |||||||||||| || ||||| || ||||||||||| ||| Sbjct 31374 CCTCCACGCAACCGCAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCGAT 31433 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || |||||||| || ||||| || | || |||||||| | ||| Sbjct 31434 AGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCGGA 31493 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| || ||| ||| | || | | |||||| || |||||| Sbjct 31494 ATGCCTTCCTTGTCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCCACC 31553 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||| || || || || |||| || || || || |||||||| Sbjct 31554 TCCAACGTTATCGTCTTCCCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 Score = 122 bits (134), Expect = 1e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || |||| || | |||| || | ||| ||||| || || |||||||| | Sbjct 31600 TGCCACCCCTTAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCG 31659 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 |||| || | | || || |||||||| || |||||||||||||||||||| || | | Sbjct 31660 ATAGCGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGGG 31719 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||| |||||| || ||| ||| | || | | |||||| || |||| Sbjct 31720 GGATTCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATCGTGTCCGACGGCTCCA 31779 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | |||| |||||| || || || || |||||||| || ||||| |||||||| Sbjct 31780 CCTCCAGCGTGATAGTCTTCCCGGTTAGCGTTTTCACGAAGATCTGCATTTT 31831 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| ||||| || | |||| |||||||| || || || || Sbjct 31181 CTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAA 31240 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||| ||||| | || | | ||| |||||| |||||| || | | Sbjct 31241 AATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATT 31300 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | | ||| | ||| || || | |||||||||||| || |||| ||| || || Sbjct 31301 CTCTATGGAGTCTGATGGTTCTACTTCTAGCGTGATGGTTTTCCCTGTCAACGTCTTCAC 31360 Query 46582 AAAGATTTGCATT 46594 || ||||||||| Sbjct 31361 GAAAATTTGCATT 31373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564939042677880