Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6222 154 1e-32 seq1 145 8e-30 seq479 125 7e-24 seq1287 114 1e-20 seq45 87.8 2e-12 seq3126 82.4 8e-11 seq647 82.4 8e-11 >seq6222 Length=16261 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| |||| |||||| ||| Sbjct 567 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGAGCCCAGT 626 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| |||||||| || ||||| |||| || Sbjct 627 GACACCATTGAAAACG-TAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 685 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| |||| ||||||||| |||||||| Sbjct 686 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 745 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| ||||||||||| |||| || ||| Sbjct 746 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGC 794 Score = 152 bits (168), Expect = 5e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || || || ||||| ||||||||| | || |||||| | Sbjct 335 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCC 394 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | | | || | || |||| |||||||| || ||||| |||| Sbjct 395 TAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGA 454 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | ||| ||||| |||||||| |||| ||||||||| ||||| Sbjct 455 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 514 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || ||| | || ||||| ||||||||||| |||| || ||| Sbjct 515 CAACATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGC 566 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| ||| Sbjct 1023 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAAGTTGAGCCCAGT 1082 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| |||||||| || ||||| |||| || Sbjct 1083 GACACCATTGAAAACG-TGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 1141 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||| || ||||||||| Sbjct 1142 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACGCTGTCCGACTACAA 1201 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| ||||||||||| |||| || ||| Sbjct 1202 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGC 1250 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || ||||| || ||||| | || |||||| ||| Sbjct 795 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAGT 854 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| |||||||| || ||||| | || || Sbjct 855 GACACCATAGAGAATGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAG 914 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||||| Sbjct 915 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 974 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || ||||| ||||||||||| ||||||| ||| Sbjct 975 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGGC 1022 >seq1 Length=14292544 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| || Sbjct 9556638 AACATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 9556579 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | || | || |||| ||||| || || || ||| |||| Sbjct 9556578 AGCGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGA 9556520 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | || ||||| |||||||| || | |||||||| |||||| Sbjct 9556519 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTA 9556460 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || |||||| | || ||||| |||| || ||| Sbjct 9556459 CAACATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGCCTGAGGGGAGGC 9556408 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| | || || ||| ||| Sbjct 9556179 ATGCAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGT 9556120 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || || |||| || Sbjct 9556119 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCA 9556061 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 9556060 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 9556001 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || |||||| | || ||||| |||| || || Sbjct 9556000 CATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGCCTGAGGGGTGG 9555953 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || |||||||| | || |||||| ||| Sbjct 9556407 ATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACTCTGGAGGTCGAGCCCAGT 9556348 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || ||| | || || Sbjct 9556347 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCA 9556289 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 9556288 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 9556229 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||||||||| |||| || || Sbjct 9556228 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 9556181 >seq479 Length=216575 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| | || || || | || Sbjct 29832 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTTGAAGTTGAATCTTCC 29773 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||||| | ||||| ||||||||||| |||||||| Sbjct 29772 GACACGATCGAAAATGTAAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCCGACCAA 29713 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| ||| || || || ||||| |||| | || ||| ||||||||| Sbjct 29712 CAGAGGCTTATTTTCGCAGGGAAGCAACTGGAAGACGGCAGGACTCTCTCTGACTACAAC 29653 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||| |||||| | || || ||| |||| Sbjct 29652 ATCCAGAAGGAATCTACCCTTCATCTGGT 29624 >seq1287 Length=55868 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || ||| | || || ||||||||||| | || || || | | Sbjct 31373 AATGCAAATTTTCGTGAAGACGTTGACAGGGAAAACCATCACGCTAGAAGTAGAACCATC 31314 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | |||| ||| |||| ||||||||||||||||| | ||||| Sbjct 31313 AGACTCCATAGAGAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 31254 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| || || |||||||| || |||| | || || |||||||| Sbjct 31253 ACAGCGTTTGATTTTTGCAGGAAAACAGCTCGAGGACGGAAGAACGCTATCGGACTACAA 31194 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| ||||||| || | || || || ||| | || || Sbjct 31193 CATTCAGAAGGAGTCGACGCTCCACCTTGTACTTCGATTGCGGGGAGG 31146 Score = 111 bits (122), Expect = 2e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| |||||||| || || || || ||||| | || || ||| | Sbjct 31832 AAAAATGCAGATCTTCGTGAAAACGCTAACCGGGAAGACTATCACGCTGGAGGTGGAGCC 31773 Query 38300 CACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||| | || |||| | || | ||||| | |||||||||||||| ||| | | Sbjct 31772 GTCGGACACGATTGAGAACG-TGAAGGCGAAAATTCAGGACAAAGAGGGAATCCCCCCTG 31714 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||||| | || | |||||| || |||||||| || | | || || |||| Sbjct 31713 ATCAGCAGCGCTTGATATTCGCGGGGAAGCAGCTGGAAGATGGCAGAACGCTATCGGACT 31654 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| || |||||| | || || || ||||| || || | || || ||| Sbjct 31653 ACAACATTCAGAAGGAATCTACCCTTCACTTGGTTCTCCGCCTAAGGGGTGGC 31601 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || | || ||||| || || || | || || ||| | | Sbjct 31145 AATGCAAATTTTCGTGAAGACTTTAACCGGCAAGACTATTACTCTGGAGGTAGAGCCATC 31086 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | ||| | || | ||||| | || || || || || || | ||||| Sbjct 31085 TGATACGATAGAAAATGTGAAGGCGAAAATTCAAGATAAGGAAGGCATCCCTCCTGACCA 31026 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| ||||| ||||| || || |||| | || || |||||| || Sbjct 31025 ACAGCGATTGATTTTTGCGGGAAAACAACTCGAGGACGGAAGAACGCTATCCGACTATAA 30966 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||| ||||||||| | || || ||||||||| || Sbjct 30965 CATTCAAAAGGAATCAACTCTCCATTTGGTGTTG 30932 >seq45 Length=4641476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| ||||||||| || ||||| ||||| | || | Sbjct 476398 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 476457 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 476458 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 476517 Query 133037 CCACCA 133042 | |||| Sbjct 476518 CGACCA 476523 >seq3126 Length=28506 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 |||||||| ||||||| ||| |||||||| || || ||||| || || || |||||||| Sbjct 13435 TACATTTCTGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAACGCGCCTCT 13376 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 | ||||||||||||| ||| ||||| ||| Sbjct 13375 GTGATCTGCACTTCTTGACTGAACCGCTCCACC 13343 >seq647 Length=124777 Score = 82.4 bits (90), Expect = 8e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||||||||| || ||| || |||||||||||||| || || ||||| || || | Sbjct 8729 GCAAGCAAAATCTGCATGTAAACCCTCGTCCCTGGAGATTAGCTCGTTCGAAAACGTAAG 8670 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||| | || ||||| || |||||| | |||||| |||||| || ||| | Sbjct 8669 TCCCGGCATTAATCCTCGTTTCTTCAGCCAATAGATGGCGCAGAAACTCCCGCTAAAAAG 8610 Query 133014 GACGCCCTCGACGGCCGCGAAA-GCCACC 133041 || |||||| || || || ||| |||||| Sbjct 8609 GATGCCCTCAAC-GCAGCAAAAGGCCACC 8582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499907902232960