Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1287 143 1e-28 seq479 109 2e-18 seq4212 89.7 2e-12 seq195 89.7 2e-12 >seq1287 Length=55868 Score = 143 bits (158), Expect = 1e-28 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || | || || || ||||||||||| || || || |||| Sbjct 31145 AATGCAAATTTTCGTGAAGACTTTAACCGGCAAGACTATTACTCTGGAGGTAGAGCCATC 31086 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | | || |||||||||||||||||||| || |||||||| || Sbjct 31085 TGATACGATAGAAAATGTGAAGGCGAAAATTCAAGATAAGGAAGGCATCCCTCCTGACCA 31026 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| || || ||||| | || |||||||| || || |||||||| | | || ||||| Sbjct 31025 ACAGCGATTGATTTTTGCGGGAAAACAACTCGAGGACGGAAGAACGCTATCCGACTATAA 30966 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| |||| || || || || || ||||| Sbjct 30965 CATTCAAAAGGAATCAACTCTCCATTTGGTGTTGAGACT 30927 Score = 113 bits (124), Expect = 2e-19 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || |||| || ||||| || || || || || ||| |||| Sbjct 31373 AATGCAAATTTTCGTGAAGACGTTGACAGGGAAAACCATCACGCTAGAAGTAGAACCATC 31314 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || ||| || | | ||| ||| || || || || || ||||||||||| || || Sbjct 31313 AGACTCCATAGAGAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 31254 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||||| ||||| |||| ||||| || || || |||||||| | |||| || || Sbjct 31253 ACAGCGTTTGATTTTTGCAGGAAAACAGCTCGAGGACGGAAGAACGCTATCGGACTACAA 31194 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACATTTTTT 391288 ||| | ||||| | || || ||| | ||| | || || | ||| ||| || |||| Sbjct 31193 CATTCAGAAGGAGTCGACGCTCCACCTTGTACTTCGATTGCGGGGAGGAATGCAAATTTT 31134 >seq479 Length=216575 Score = 109 bits (120), Expect = 2e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || || || ||||| |||||||| || Sbjct 29832 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTTGAAGTTGAATCTTCC 29773 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || ||||||||||| ||||| ||||||||||| || ||| Sbjct 29772 GACACGATCGAAAATGTAAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCCGACCAA 29713 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | |||||| ||||||| ||||| ||||| || || ||| | | || || || Sbjct 29712 CAGAGGCTTATTTTCGCAGGGAAGCAACTGGAAGACGGCAGGACTCTCTCTGACTACAAC 29653 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 29652 ATCCAGAAGGAATCTACCCTTCA 29630 >seq4212 Length=22462 Score = 89.7 bits (98), Expect = 2e-12 Identities = 216/323 (67%), Gaps = 3/323 (1%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||| || ||||| | ||||| || || ||||| || | | ||| || || Sbjct 19204 CCTGAGGAGATTTCGGCGATGGTGCTGGGCAAGATGAAGGATATCTCGGAATCGTACCTT 19263 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || ||||| | || || || || || || || || || || |||||| |||| || Sbjct 19264 GGCCGCCCAGTGAAAGAAGCGGTGATCACGGTGCCGGCATACTTTAATGATTCACAGCGC 19323 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || |||||||| || ||| ||||| ||||| || || ||||| || || || ||| Sbjct 19324 CAGGCCACTAAAGACGCGGGAACGATTGCAGGTTTGAACGTCCTTCGCATCATCAACGAA 19383 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483 || || |||||||| | |||||||| || ||| || | | | || |||| ||| Sbjct 19384 CCAACTGCAGCTGCAATTGCATATGGTCT-GGACAAGCGCG-GCTGCGGA-GAAATGAAT 19440 Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGAT 451543 | || | || || | ||||| || || ||| |||| | | | ||||||||| Sbjct 19441 GTGTTGATTTTCGACATGGGTGGTGGCACCTTCGATGTTTCTCTGTTGACTATTGAAGAT 19500 Query 451544 GGGGTATTTGAAGTAAAGGCAAC 451566 || | ||||| ||| ||||| Sbjct 19501 GGTATTTTTGAGGTACGTGCAAC 19523 >seq195 Length=1492744 Score = 89.7 bits (98), Expect = 2e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 451306 TTCTCCAG-TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGC 451364 || ||||| ||||| |||| || |||| || || ||||| ||||||||||| || || | Sbjct 1469238 TTTTCCAGGTTACTCATGCTGTTGTTACCGTGCCAGCTTACTTCAATGATGCTCAGCGTC 1469297 Query 451365 AAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAAC 451424 | || || |||||||| || ||||||||| || || || | || ||||||||||| | Sbjct 1469298 AGGCCACAAAAGATGCTGGCACTATTGCTGGGTTGAACGTGATGCGCATTATTAATGAGC 1469357 Query 451425 C 451425 | Sbjct 1469358 C 1469358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974645875709852