Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4212 259 4e-63 seq163 102 6e-16 seq38 102 6e-16 >seq4212 Length=22462 Score = 259 bits (286), Expect = 4e-63 Identities = 943/1464 (64%), Gaps = 44/1464 (3%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || || || || ||||||||||| || ||||| ||||| || || || | | || || Sbjct 20315 ATGCCGTTTGCGTCCAAATCAAACGTAACTTCGATTTGTGGAACTCCCCGGGGCGCCGGA 20256 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || |||| || ||| | || ||| ||| || || || || | ||||||| Sbjct 20255 GGGATTCCATCCAGATGGAATTTACCGAGAAGATTGTTGTCCTTCGTCATCGGTCGTTCA 20196 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || ||||| | ||| || || ||| || ||||| | || || ||||| | | Sbjct 20195 CCTTCGAAGACTTGAATGAGCACACCAGGCTGGTTATCGGCGTACGTCGTAAACGTTTGG 20136 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || |||||| |||||| ||||| |||| ||| | | ||||| | ||||| || Sbjct 20135 GACTTTTTAGTAGGAATCGTTGTATTTCGCGGAATCAGCGTCGTCATCACGCCACCGGCA 20076 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 ||||||| || || ||||| || | ||||| | |||| | | || | | Sbjct 20075 GTTTCTAGCCCGAGTGAAAGTGGCGCCACATCCAAGAGGAGCAGCTGCTGTACCTGAG-- 20018 Query 517574 TCAGTT--TGACCAAC--AAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 || | ||||| | || |||||| ||||| | |||||||| || || |||||||| Sbjct 20017 --AGCTCGTGACCCCCTTAATAATAGCAGCTTGCACCGCAGCACCGTACGCGACAGCTTC 19960 Query 517630 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT 517689 |||||| |||| | | ||| |||||| ||||| || | | | | || Sbjct 19959 ATCAGGGTTAATCGACCGGCATGGTTCTTTACCGTTGAAGAATTCGGTGATGAACTGCTG 19900 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT---TT 517746 | ||| ||||| | | |||||| || || | ||||| ||| || ||| || Sbjct 19899 GATCTTCGGAATTCTGGTTGATCCACCTACGAGTACAACTTCGCTTAC---TGAACGCTT 19843 Query 517747 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTC 517806 || | |||||| || || ||||| || || || || | || |||| Sbjct 19842 GTCAATGCCTGAATCTTTCAACACCTTTTCGACCGGGTCCAGTGAGTGACGGAAGTAGTC 19783 Query 517807 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA--TAATCAATTCCTTCG 517864 ||||||||||| || || | | ||| |||| | || || || |||||| Sbjct 19782 CATGCAAAGTTCTTCAAAACGCGCGCGCG--AGATGGACACTGAGTAGTCGATGCCTTCG 19725 Query 517865 AACAAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAAGATAGTGCACGTTTAGCAC 517922 ||||||| || | ||| || || | || || | | | | ||||| |||| || | Sbjct 19724 TACAAAGAGTCGATTTCGATGGTTGCCTGCGTGCTGCTGGAAAGAGTGC--GTTTCGCGC 19667 Query 517923 GTTCACATGCTGTCCTTAGTCTTCGTAAGGCT------TT--TGCTGATTGATTCAAATC 517974 |||| || |||| || | |||| ||| || ||||||| | || Sbjct 19666 GTTCGCACTGGGTCCGGAGACGGCGTAGAGCTCGGCTGTTCGTGCTGATGTCCTTGCCTC 19607 Query 517975 TGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATC 518034 |||| | |||||||||| || | || || | || || ||||| || || || Sbjct 19606 TGTTCT-----TTCTCTTGAAGTCCTGCACGCAGAAATCCACCAGGCGATTGTCGAAGTC 19552 Query 518035 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAG 518094 || || ||||| | |||| || | ||| || | ||| | |||| |||||||||| Sbjct 19551 CTCGCCCCCCAAGTGGGTATCGCCGGCCGTTGCACGTACCTCAAAAATACCATCTTCAAT 19492 Query 518095 AGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 518154 || ||| |||| ||||| ||| ||||||||||| || ||||| | ||||||||||| Sbjct 19491 AGTCAACAGAGAAACATCGAAGGTGCCACCACCCATGTCGAAAATCAACACATTCATTTC 19432 Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 | | | || || |||||||| |||| ||||| ||||||||||| || || || Sbjct 19431 TCCGCAGCCGCGCTTGTCCAGACCATATGCAATTGCAGCTGCAGTTGGTTCGTTGATGAT 19372 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | | || || | ||| ||||| |||| || ||||||||||| || | |||||||| Sbjct 19371 GCGAAGGACGTTCAAACCTGCAATCGTTCCCGCGTCTTTAGTGGCCTGGCGCTGTGAATC 19312 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334 ||||| ||||| || || || || || || || | ||| |||| || || | Sbjct 19311 ATTAAAGTATGCCGGCACCGTGATCACCGCTTCTTTCACTGGGCGGCCAAGGTA--CGAT 19254 Query 518335 TGCCG---TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG 518391 | ||| | | ||||| || | | | ||| | ||||| | || ||| | Sbjct 19253 T-CCGAGATATCCTTCATCTTGCCCAGCACCATCGCCGAAATCTCCTCAGGGTGGAAGCA 19195 Query 518392 CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAAC 518448 ||| | || ||| || ||||||| ||||| | ||| || || || Sbjct 19194 CTTCGTCTCTCCTTGGTAATGCACTTCAATCAGCGGTTTGTCACCTTTGCCAGCGATTAC 19135 Query 518449 TTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 518508 ||| || ||||||| |||||| || || || || |||||| || | | || || Sbjct 19134 TTTGAACGGCCAGTGTTTCATGTCAGACTGCACCGACGGGTCATCGAACTTGCGGCCGAT 19075 Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568 || ||||| ||||| ||||| ||||| ||| || ||| |||| | ||| || || Sbjct 19074 CAAGCGTTTCGCATCGAAAATTGTATTTTCTGGGTTGCGTGCTACTTGGTTTTTCGCGGC 19015 Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628 ||| || | || |||| || || || || | || || || || || |||||||| || Sbjct 19014 ATCCCCGACAAGTCGTTCCGTGTCCGTGAACGCCACGTACGAGGGCGTCGTGCGATTGCC 18955 Query 518629 TTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGT 518688 || || ||||| || ||||| || | |||||| ||| ||||| || || | || Sbjct 18954 CTGGTCGTTCGCTATGATTTCCACCGTGTCATTTTTCCACACACCAACGCACGAGTACGT 18895 Query 518689 TGTTCCTAAATCAATACCAATAGC 518712 || || | |||||||| | ||| Sbjct 18894 GGTCCCCAGGTCAATACCCACAGC 18871 >seq163 Length=1860922 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 1167973 TGTTGTAGCTACGGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 1167914 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| |||||||||||||| || ||||| ||||| Sbjct 1167913 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATAGGAAGAGCTGGTCG 1167854 Query 367113 TGATGG 367118 |||||| Sbjct 1167853 TGATGG 1167848 >seq38 Length=5113197 Score = 102 bits (112), Expect = 6e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| || | ||||||||| || || || || ||||| | || ||| Sbjct 2806179 TTCTTGTCCAGACCATAGGCTATAGCAGCAGCTGTCGGCTCGTTGATAATCCGCAGCACA 2806120 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| |||| |||||||| ||||| || | || || ||||||||||| Sbjct 2806119 TTGAGCCCTGCAATGGTTCCAGCATCTTTTGTGGCCTGCCGCTGGGAGTCGTTAAAATAG 2806060 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||| | || |||| ||| || Sbjct 2806059 GCTGGTACAGTGACTACAGCATTAGTGAC 2806031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778719910656514