Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4212 479 4e-130 seq195 100 4e-16 seq440 91.5 2e-13 >seq4212 Length=22462 Score = 479 bits (530), Expect = 4e-130 Identities = 1100/1646 (67%), Gaps = 28/1646 (2%) Strand=Plus/Minus Query 6511 CATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGC--GTACTTT 6568 ||| || || |||||||| || | | || |||||||| || | | ||| || | | Sbjct 20508 CATGTGGTAGCAGTAGTTCTCCAAGCTGTTTTTCGCCTCAAC--TCTACGCATGTTCGCT 20451 Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||||||| | || || || || || || || ||||| | || || |||| Sbjct 20450 TCATCTTCAGCCTTGTATTTCTCTGCTTCCTGCACCATGCGGTTGATCTCGTCTTGGCTG 20391 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | ||| || || ||||| || |||||||||| | | || || | || ||| || || Sbjct 20390 AGTCTTCCTTTCTCATTGGTGATCGTAATCTGGTTGCTCTTCCCGGTGGACTTGTCCTCC 20331 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || | || ||| || || ||||| || | ||| ||| | || | |||||||| Sbjct 20330 GCTGTCACGCTCATGATGCCGTTTGCGTCCAAATCAAACGTAACTTCGATTTGTGGAACT 20271 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 |||| || || | || || || | || ||| |||| || | | |||| ||| || Sbjct 20270 CCCCGGGGCGCCGGAGGGATTCCATCCAGATGGAATTTACCGAGAAGATTGTTGTCCTTC 20211 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | || ||||||||||| |||||| ||| ||| |||| || ||||| | Sbjct 20210 GTCATCGGTCGTTCACCTTCGAAGACTTGAATGAGCACACCAGGCTGGTTATCGGCGTAC 20151 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || | || |||| || |||| |||||||| ||||||| |||||| | || ||| Sbjct 20150 GTCGTAAACGTTTGGGACTTTTTAGTAGGAATCGTTGTATTTCGCGGAATCAGCGTCGTC 20091 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | ||||| |||||| || || || || || || | ||| |||||||| | ||| Sbjct 20090 ATCACGCCACCGGCAGTTTCTAGCCCGAGTGAAAGTGGCGCCACATCCAAGAGGAGCAGC 20031 Query 6989 TCTTGAAC---AGAT-TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 | || || ||| |||| || ||| | | || || ||||| |||| || || Sbjct 20030 TGCTGTACCTGAGAGCTCGTGACC----CCCTTAATAATAGCAGCTTGCACCGCAGCACC 19975 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104 ||| ||||| || ||||| |||||||||| ||||||||||||| || | || Sbjct 19974 GTACGCGACAGCTTCATCAGGGTTAATCGACCGGCATGGTTCTTTACCGTTGAAGAATTC 19915 Query 7105 CGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 | | | || || || ||||| |||| || |||||||| || | || | ||| | Sbjct 19914 GGTGATGAACTGCTGGATCTTCGGAATTCTGGTTGATCCACCTACGAGTACAACTTCGCT 19855 Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTT 7224 ||| || || || ||| ||| | |||||||| || |||| | | Sbjct 19854 TACTGAACGCTTGTCAATGCCTGAATCTTTCAACACCTTTTCGACCGGGTCCAGTGAGTG 19795 Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 |||||| ||||||| || ||||| |||||||| || || | ||||| || | || Sbjct 19794 ACGGAAGTAGTCCATGCAAAGTTCTTCAAAACGCGCGCGCGAGATGGACACTGAGTAGTC 19735 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTT 7342 | ||| ||||| || || || ||||| ||||||| || ||| | | | | | || Sbjct 19734 GATGCCTTCGTACAAAGAGTCGATTTCGATGGTTGCCTGCGTGCTGCTGGAAAGA--GTG 19677 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 || || ||||| || ||| || || | ||| || || || || ||| | || Sbjct 19676 CGTTTCGCGCGTTCGCACTGGGTCCGGAGACGGCGTAGAGCTCGGCTGTTCGTGCTGATG 19617 Query 7403 TCTTT-CTTATGTT--TACGTTTAAACTCTT---CAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || | | |||| | | || || || | | |||| | ||| | | Sbjct 19616 TCCTTGCCTCTGTTCTTTCTCTTGAAGTCCTGCACGCAGAAATCCACCAGGCGATTG--- 19560 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||||||| ||||| || || || || || ||||| ||||| Sbjct 19559 TCGAAGTCCTCGCCCCCCAAGTGGGTATCGCCGGCCGTTGCACGTACCTCAAAAATACCA 19500 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | |||| |||||||| || || |||||||||| ||| ||||| | || Sbjct 19499 TCTTCAATAGTCAACAGAGAAACATCGAAGGTGCCACCACCCATGTCGAAAATCAACACA 19440 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || || | ||| || ||||| || || || || || || |||||||| Sbjct 19439 TTCATTTCTCCGCAGCCGCGCTTGTCCAGACCATATGCAATTGCAGCTGCAGTTGGTTCG 19380 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || ||||| ||||| || ||||| ||| |||| ||||| || || || || Sbjct 19379 TTGATGATGCGAAGGACGTTCAAACCTGCAATCGTTCCCGCGTCTTTAGTGGCCTGGCGC 19320 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| ||||| | ||||| || | ||| || || Sbjct 19319 TGTGAATCATTAAAGTATGCCGGCACCGTGATCACCGCTTCTTTCACTGGGCGGCCAAGG 19260 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 |||||||||| |||||| ||||| ||| || ||||||| |||||||| |||| Sbjct 19259 TACGATTCCGAGATATCCTTCATCTTGCCCAGCACCATCGCCGAAATCTCCTCAGGGTGG 19200 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || ||||| || || | ||| |||||||||| ||||| || | || | | Sbjct 19199 AAGCACTTCGTCTCTCCTTGGTAATGCACTTCAATCAGCGGTTTGTCACCTTTGCCAGCG 19140 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || || || ||| ||| | |||||| || || ||| |||| ||||| | Sbjct 19139 ATTACTTTGAACGGCCAGTGTTTCATGTCAGACTGCACCGACGGGTCATCGAACTTGCGG 19080 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | || || ||||| |||| ||| |||| ||||| ||| |||||| ||| Sbjct 19079 CCGATCAAGCGTTTCGCATCGAAAATTGTATTTTCTGGGTTGCGTGCTACTTGGTTTTTC 19020 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || ||||||| ||| ||||| | | |||| ||||| |||||||| || ||||| Sbjct 19019 GCGGCATCCCCGACAAGTCGTTCCGTGT---CCGTGAACGCCACGTACGAGGGCGTCGTG 18963 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 ||||| || ||||||||||| || ||||| || ||| |||| ||| || || |||||| Sbjct 18962 CGATTGCCCTGGTCGTTCGCTATGATTTCCACCGTGTCATTTTTCCACACACCAACGCAC 18903 Query 8117 GAATACGTTGTTCCTAAATCAATACC 8142 || ||||| || || | |||||||| Sbjct 18902 GAGTACGTGGTCCCCAGGTCAATACC 18877 >seq195 Length=1492744 Score = 100 bits (110), Expect = 4e-16 Identities = 131/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTC-ATGGCTGTTTGGTTCTT 7995 || || || ||||| |||||||| || ||||| | ||||| ||| | | | ||||||| Sbjct 1468661 CCTATGAGCCGCTTGGCATCAAACACGGTGTTCTCAGGGTTGGATGTCAGCT-GGTTCTT 1468603 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||||| |||||||| || || || | ||| || || ||||| || || || | Sbjct 1468602 GGCCGCATCCCCGATCAGGCGCTCCCCCTCGGGCGTGAATGCCACGTAGGACGGCGTGAT 1468543 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 || ||||| |||||||| || || |||||||||||| |||| | ||||||| |||| Sbjct 1468542 GCGGTTCCCCTGGTCGTTGGCGATGATTTCTACGCGGCCGTTCTTGAAGACGCCCACGC 1468484 >seq440 Length=257732 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| | || || | |||||| || || || | | || ||||||| Sbjct 208435 CCAATGAGACGCTTAACGTCGAAGAGTGTGTTCGCCGGATTGATTGTGGCTTCGTTCTTC 208376 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || | ||||| | || | |||||||| |||||||| || || || Sbjct 208375 GCAGCTTCACCAACTTTCCGTTCTTCAT---CGGTAAACGCAACGTACGAGGGAGTGATT 208319 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || ||||||||||| || |||||||| || ||||| ||| | ||| |||||||| Sbjct 208318 CGGTTCCCTTGGTCATTTGCAATAATATCGACGCGCCCGTGACGATAGATCCCGACGCAA 208259 Query 8117 GAATACGTTGTTCC 8130 || ||||| || || Sbjct 208258 GAGTACGTGGTACC 208245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634796425729960