Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq715 104 3e-17 >seq715 Length=106915 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 112292 CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAA 112351 |||| |||| | || || || || || || ||| | ||||||||||| || || | || Sbjct 92668 CAAG-CTCAGATAGAAACAGGCACTCCGTACATGATGTACAAAGACGCTTGCAATAAGAA 92610 Query 112352 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGA 112411 ||| ||||||||||||||||| ||| ||| || |||| | || || || | | || Sbjct 92609 GAGCAATCAAAAGAATTTGGGGACGATAAAGTGTGGCAACTTGTGCACTGAGGTGGTCGA 92550 Query 112412 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 112471 ||||| |||||| ||| ||| || || ||||| || || || | || || | || Sbjct 92549 GTTTACTAGCAAAGACGAGGTGGCCGTATGCAACCTTGCGTCGGTCTCACTTCCTAGGTT 92490 Query 112472 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACT 112510 |||||| || | | || ||||||||||||| || || Sbjct 92489 TGTGGACCCCCAAAGCAAATCATTTGATTATGAGAAGCT 92451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620413647065680