Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1099 120 4e-22 seq14 96.9 4e-15 seq214 95.1 1e-14 seq76 93.3 5e-14 >seq1099 Length=64186 Score = 120 bits (132), Expect = 4e-22 Identities = 254/371 (68%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 110095 ATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAG 110154 || ||| |||| || || ||||||||||| || || || ||||| ||| ||||||| | Sbjct 43306 ATGAACGCATCAGCAAGGCCCTGAACACCCAGGCCGATAGGGCGGTGCCTCATGTT-GCT 43364 Query 110155 CGT-CGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213 | | || || || || || ||| |||| | |||||| || | || | || ||| Sbjct 43365 CTTGCGCGCTTCTTGGACAGGATAATAGTTCCTGTCGATAACGCAGTTCAAGTTGCGCGT 43424 Query 110214 CACAGTCTTCG-TGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGA 110272 | | | ||| | || | | | ||||||||| | ||| |||||||| || || | Sbjct 43425 CGC-GACTTTGACGACAGCTTTTAATTTGTCGTAGTTGAAAGTTTTCGTTTCGCGATCAA 43483 Query 110273 CATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGT 110332 || | || || || | || ||||| | |||||||||| ||||| ||| || | Sbjct 43484 CAAACTTAGGAAGGGAAAGGGACGCCAAGTTGCACACAGCGACTTCGTCCTTGCTCGTAT 43543 Query 110333 ATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCG 110392 | |||| |||||| ||||| || ||| || |||||| |||| |||||| || || Sbjct 43544 ACTCCACAATTTCTGTACATAAATTGCTACCTTTAATGGTGCCCAGGTTCTTTTGGTTGC 43603 Query 110393 ATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACT 110452 ||| ||||| |||||||| || | |||||| || || || || || |||| | || Sbjct 43604 TTTTTCTATTGCAGGCATCCTTGTACAACATGTACGGCGTCCCTGTCTCGATCTGAG-CT 43662 Query 110453 TG-AGAATGGC 110462 || | |||||| Sbjct 43663 TGTAAAATGGC 43673 >seq14 Length=6607037 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 2417985 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 2417926 Query 136777 GGGAACAGCTT 136787 || |||||| Sbjct 2417925 CGGGCCAGCTT 2417915 Score = 95.1 bits (104), Expect = 1e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 2416088 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 2416029 Query 136777 GGGAACAGCT 136786 || ||||| Sbjct 2416028 CGGGCCAGCT 2416019 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 929384 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 929326 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1163482 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1163424 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 |||||||| |||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 2417155 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 2417096 Query 136777 GGGAACAGCTTTTAGATATATTTTT 136801 || || | || | | ||||||| Sbjct 2417095 CGGGCCACTTCTTGGTTTTATTTTT 2417071 >seq214 Length=1293776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 |||||||||| | |||||||| |||| | || |||||||| ||||| || |||||||| Sbjct 82119 GTAGATGTTACTGGTGTAGGGCTCGATGGATTCGTTGTTGCCCAGGATCTGAGCAGTGGA 82060 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||| || |||||||| | | |||||| ||||||| || ||| Sbjct 82059 AGCAGTTGGCATGGGGGAAAGGAGAAGGCTGTTTCTGACACC 82018 >seq76 Length=3695371 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 3051553 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 3051611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588664070948200