Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1099 152 6e-32 seq715 96.9 4e-15 seq214 82.4 9e-11 >seq1099 Length=64186 Score = 152 bits (168), Expect = 6e-32 Identities = 314/462 (68%), Gaps = 4/462 (1%) Strand=Plus/Plus Query 106164 CTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAG 106223 || |||||| || ||||| ||||| |||| |||| || ||| ||| || ||| Sbjct 43199 CTGCAGCCAGCTCGCAGCTGGCCTCAAGGGCAGCGTAGTAAATGCATTCGAAAATATTCC 43258 Query 106224 CATTCA-TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCC 106282 |||| |||||| |||||| | ||||| | || || || || || |||| Sbjct 43259 TGTTCAATCTCCT-GGCTTCGGCGCTGTCAAAGGGATACCGCAGCATCATGAACGCATCA 43317 Query 106283 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTC 106342 || || || |||||||||| || ||||| | ||| | ||| || ||| ||||| Sbjct 43318 GCAAGGCCCTGAACACCCAGGCCGATAGGGCGGTGCCTCATGTTGCTCTTGCGCGCTTCT 43377 Query 106343 TCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT- 106401 | || |||||| | || ||||| || || | ||| | || || | | ||||| Sbjct 43378 TGGACAGGATAATAGTTCCTGTCGATAACGCAGTTCAAGTTGCGCGTCGCGA-CTTTGAC 43436 Query 106402 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 106461 || | | | ||| || || | ||||| || || || ||| |||| ||||| Sbjct 43437 GACAGCTTTTAATTTGTCGTAGTTGAAAGTTTTCGTTTCGCGATCAACAAACTTAGGAAG 43496 Query 106462 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 106521 || | || ||||| ||||| ||||| || ||||| || ||||| | |||||| Sbjct 43497 GGAAAGGGACGCCAAGTTGCACACAGCGACTTCGTCCTTGCTCGTATACTCCACAATTTC 43556 Query 106522 TGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 |||||| || ||| || ||||| || |||| ||||||||||| || ||| | ||||| Sbjct 43557 TGTACATAAATTGCTACCTTTAATGGTGCCCAGGTTCTTTTGGTTGCTTTTTCTATTGCA 43616 Query 106582 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||||||||||| | |||||| |||||||| ||||| |||| Sbjct 43617 GGCATCCTTGTACAACATGTACGGCGTCCCTGTCTCGATCTG 43658 >seq715 Length=106915 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||| || | ||||| | || || || | ||||| || ||| ||| || || || Sbjct 92487 ACAAACCTAGGAAGTGAGACCGACGCAAGGTTGCATACGGCCACCTCGTCTTTGCTAGTA 92546 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 |||| | | || || ||||||||| || ||| |||||||||||||||||||| || Sbjct 92547 AACTCGACCACCTCAGTGCACAAGTTGCCACACTTTATCGTCCCCAAATTCTTTTGATTG 92606 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||||| || ||||| || || ||||| | |||||| || || || || || |||| | | Sbjct 92607 CTCTTCTTATTGCAAGCGTCTTTGTACATCATGTACGGAGTGCCTGTTTCTATCTGAG-C 92665 Query 106628 TTG-AGAATTGCCTTCCACA 106646 ||| || ||||| ||||| Sbjct 92666 TTGTAGTATTGCAAACCACA 92685 >seq214 Length=1293776 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 || ||||| | || ||||| |||| ||| | || || ||||||| |||| || Sbjct 79368 GTATACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAGGTTCTGCTGA 79309 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| ||||||| | || ||||| |||||||| ||||| || ||||||||||| Sbjct 79308 TTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCCGTCTGC 79249 Query 106625 GACTTGAGAATTGCCTTCCA 106644 |||| || || || | ||| Sbjct 79248 GACTCGATGATGGCGTACCA 79229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589668338793560