Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1287 174 3e-38 seq479 147 5e-30 seq6222 145 2e-29 seq1 131 4e-25 >seq1287 Length=55868 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || | ||| || || || ||||||||||| || | || ||||| |||||||| Sbjct 31392 ACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCGATAGTGTTCTGCCATCTTCC 31451 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| ||||| ||||| |||||||| ||||||||||| ||||| ||| Sbjct 31452 AGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCGGAATGCCTTCCTTGTCCTGA 31511 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || ||||| || ||||| || |||||| || | || | |||||| Sbjct 31512 ATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCCACCTCCAACGTTATCGTCTTC 31571 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||| || ||||| | |||||| Sbjct 31572 CCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || ||||| ||||| || | || ||||| || || ||| Sbjct 31164 ACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCGTCCTCG 31223 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| || || | || ||||||||||||||||| || |||||||| || Sbjct 31224 AGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTGTCCTGG 31283 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || ||||| |||| ||| || ||| ||||| || || | || || Sbjct 31284 ATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTACTTCTAGCGTGATGGTTTTC 31343 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| || || ||||| | ||||||| Sbjct 31344 CCTGTCAACGTCTTCACGAAAATTTGCATT 31373 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || || || || ||||| ||||| || | || ||||| |||||||| Sbjct 31619 AACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTGCCATCTTC 31678 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || | || || || || || || || || |||||||| || Sbjct 31679 CAGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGGGGGATTCCCTCTTTGTCCTG 31738 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||| ||||||||||| |||||||| ||||| || || || | ||||| Sbjct 31739 AATTTTCGCCTTCACGTTCTCAATCGTGTCCGACGGCTCCACCTCCAGCGTGATAGTCTT 31798 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTTATG 195145 || || | ||||| ||||| | ||||||| || Sbjct 31799 CCCGGTTAGCGTTTTCACGAAGATCTGCATTTTTG 31833 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || | || ||||| || || |||||||| || || |||| || ||||| Sbjct 30927 AGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGATAGCGTTCTT 30986 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||| || || || || || || | ||| |||||||| ||||| |||||||| Sbjct 30987 CCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCC 31046 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||||||||| ||| || || || || || || || || || || || ||| Sbjct 31047 TTATCTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACCTCCAGAGTA 31106 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | ||||| || || ||||| || ||||| | ||||||| Sbjct 31107 ATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCATT 31145 >seq479 Length=216575 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || || || || || || ||||| || | ||||| || || ||||| Sbjct 29624 ACCAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTCC 29683 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| |||||||| ||||| | |||||||| |||||||| || || ||||||||| Sbjct 29684 AGTTGCTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTGA 29743 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || || || ||||| ||| ||| ||||||||||| | ||||| Sbjct 29744 ATTTTGGCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGATGGTCTTC 29803 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || ||||| | ||||| Sbjct 29804 CCTGTGAGGGTCTTGACGAAGATCTGCAT 29832 >seq6222 Length=16261 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || ||||| ||||| || || ||||| |||| || || Sbjct 1016 TCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 957 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || || || ||||||||||| Sbjct 956 GCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCC 897 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||||||| ||||| ||| || ||||| |||||||| ||| || || || Sbjct 896 TTCTTTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTC---ACTGGGCTCGACCTC 840 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | ||||| || ||||| ||||| ||||| | ||||| Sbjct 839 AAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 795 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | |||||||| Sbjct 1231 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATCTTCC 1172 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || ||||||||||||||||||||||| Sbjct 1171 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGG 1112 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||| ||||||||||| ||| || ||||||||||| | ||| Sbjct 1111 ATCTTGGCCTTCACGTTTTCAATGGTGTC---ACTGGGCTCAACTTCAAGGGTGATGGTC 1055 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| ||||| || || | ||||| Sbjct 1054 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1023 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| || | || || | ||| ||||| Sbjct 547 ACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 488 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || || || ||||||||||||||||||||||| Sbjct 487 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGG 428 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| |||||||| | || || |||||||| | ||||| Sbjct 427 ATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGATGGTCTTG 368 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 367 CCAGTCAGGGTCTTCACAAAGATCTGCAT 339 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| || | || || | ||| ||||| Sbjct 775 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 716 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || ||||||||||||||||||||||| Sbjct 715 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGG 656 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||| ||||||||||| ||| || || || || || | ||| Sbjct 655 ATCTTGGCCTTTACGTTTTCAATGGTGTC---ACTGGGCTCGACCTCGAGCGTGATGGTC 599 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 598 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 567 >seq1 Length=14292544 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | ||||||||| Sbjct 9556199 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 9556258 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || | || || || || || |||||||| ||||| || Sbjct 9556259 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGG 9556318 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| || || || || || | ||| Sbjct 9556319 ATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCCAGAGTGATGGTC 9556375 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || ||||| | ||||| Sbjct 9556376 TTACCTGTCAAGGTCTTCACGAAGATCTGCAT 9556407 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||| |||| || || | ||||||||| Sbjct 9555971 ACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 9556030 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || | || || || ||||| |||||||| ||||| || Sbjct 9556031 AGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGG 9556090 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||| |||||||| ||| ||||| || | ||| | ||| Sbjct 9556091 ATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAAGGTGATGGTC 9556147 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 9556148 TTACCAGTGAGGGTCTTCACGAAGATCTGCAT 9556179 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||| |||| || || | |||||||| Sbjct 9556427 ACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 9556486 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || || |||||||| ||||| || Sbjct 9556487 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGG 9556546 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || |||||||||||| |||||||| Sbjct 9556547 ATCTTGGCCTTGACGTTCTCGATGGTGTC 9556575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108879314793023