Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6222 105 4e-18 seq1 104 2e-17 seq1287 96.9 2e-15 >seq6222 Length=16261 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34751 ATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC 34810 ||| |||||||||| | || |||| ||| | ||| || ||||| ||||| ||||| Sbjct 1253 ATTGCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 1194 Query 34811 CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 || || | || |||| |||||||| || || ||||| || || | ||||| || | Sbjct 1193 GGACAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGG 1134 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC 34930 || | || || ||||| ||||| || ||| | | || | |||| || ||| Sbjct 1133 AGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTC 1074 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | ||| ||||| || || || || || ||||||||||||||||| Sbjct 1073 AACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1023 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 793 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 734 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || || | ||||| || | || Sbjct 733 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 674 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| || ||| | | || | |||| || ||| || Sbjct 673 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACC 614 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || ||||| || || || || |||||||||||||||||||| Sbjct 613 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 567 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||| ||| | ||| ||||||||| ||||| ||||| || Sbjct 565 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 506 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || || || || || | ||||| || | || Sbjct 505 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 446 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| || || |||| | || | | ||| || Sbjct 445 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACC 386 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || || || |||||||||||||||||||| || Sbjct 385 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 336 >seq1 Length=14292544 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || || | || | ||| || ||||| ||||| ||||| || Sbjct 9556409 CCTCCCCTCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 9556468 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| |||||||| || || ||||| || || | ||||| || | || Sbjct 9556469 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGG 9556528 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | || | || ||| || Sbjct 9556529 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACC 9556588 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || ||||| |||||||| ||||||||||| || Sbjct 9556589 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTT 9556638 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 9556181 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 9556240 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | ||||| || | || Sbjct 9556241 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGG 9556300 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | |||| || ||| || Sbjct 9556301 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 9556360 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || ||||| || || || | |||||||| ||||||||||| Sbjct 9556361 TCCAGAGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 9556407 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 9555989 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAA 9556048 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || |||||||| ||||| |||||| Sbjct 9556049 ATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 9556108 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || ||||| |||||||| Sbjct 9556109 TCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTCACG 9556168 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 9556169 AAGATCTGCAT 9556179 >seq1287 Length=55868 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | ||||| || |||| || | || ||| |||||||| || ||||||| Sbjct 31372 TTCCTCCACGCAACCGCAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCG 31431 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| |||| |||||||| || || || || || || |||||||||||| ||| Sbjct 31432 ATAGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCG 31491 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || |||||||| ||| ||| || || || || |||| || | || Sbjct 31492 GAATGCCTTCCTTGTCCTGAATTTTCGCCTTCAC--ATTCTCGATCGTGTCTGACGGTTC 31549 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||||| || || || || | ||||||||| || || ||||| Sbjct 31550 CACCTCCAACGTTATCGTCTTCCCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || ||| ||||||||||| |||||||| || ||| |||| || Sbjct 31619 AACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTGCCATCTTC 31678 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || || ||||| | || ||||| || | || | ||||| ||||| Sbjct 31679 CAGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGGGGGATTCCCTCTTTGTCCTG 31738 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| ||| || ||| | |||| || | ||| || || | || || || || Sbjct 31739 AATTTTCGCCTTCACGTTCTCAATCGTGTCCGACGGCTCCACCTCCAGCGTGATAGTCTT 31798 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || || ||||| ||||||||||| || Sbjct 31799 CCCGGTTAGCGTTTTCACGAAGATCTGCATTTT 31831 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| ||||| || | || ||| || |||||||||||||| || || ||| | | Sbjct 30930 CTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGATAGCGTTCTTCCG 30989 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || || |||||||| ||||| || | ||| || ||||| | || | || ||||| Sbjct 30990 TCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCCTTA 31049 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||| ||| || || | |||||| ||| | ||| || || | || || Sbjct 31050 TCTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACCTCCAGAGTAATA 31109 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || | ||||||||| || || ||||| Sbjct 31110 GTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||| ||| | | || | ||| | || || ||||||||||| ||||||| Sbjct 31144 TTCCTCCCCGCAATCGAAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCG 31203 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | | || || ||||||||||| ||||| || | || || |||||| | | Sbjct 31204 ATAGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAG 31263 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||||| ||| || |||| || || | || | Sbjct 31264 GAATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTA 31323 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| || || | |||||||| || || ||||| Sbjct 31324 CTTCTAGCGTGATGGTTTTCCCTGTCAACGTCTTCACGAAAATTTGCAT 31372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324465968237832