Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3126 120 3e-22 seq45 114 1e-20 >seq3126 Length=28506 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | |||||||| | Sbjct 15061 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 15002 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || || ||||| || ||||||||||| || ||||| ||||||||||| | Sbjct 15001 TCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATG 14942 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 14941 CTACCACACGTTCTCC 14926 >seq45 Length=4641476 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030 |||||| | | |||| ||||| || || | |||||| || || || || |||||||||| Sbjct 476386 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 476445 Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090 | || || || || | ||| ||||||| ||||||||| || |||||||| || ||||| | Sbjct 476446 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 476505 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCC 19118 |||| ||||| || || | ||| || || Sbjct 476506 CTGCAGCAAAGGCGACCACTCTCTCACC 476533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561811100153160