Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq38 111 1e-18 seq1287 109 4e-18 seq139 100 2e-15 seq479 93.3 3e-13 >seq38 Length=5113197 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||||||||| |||||||| ||||| || || || || || ||||||| Sbjct 2806038 ATGCTGTAGTCACTGTACCAGCCTATTTTAACGACTCCCAGCGGCAGGCCACAAAAGATG 2806097 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || ||||| || || |||||||| || || || |||||||| Sbjct 2806098 CTGGAACCATTGCAGGGCTCAATGTGCTGCGGATTATCAACGAGCCGACAGCTGCTGCTA 2806157 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 2806158 TAGCCTATGGTCTGGACAA 2806176 >seq1287 Length=55868 Score = 109 bits (120), Expect = 4e-18 Identities = 143/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 563282 TTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAA 563341 || |||| | ||| || || || | ||| |||||| || || ||||||||||| |||| Sbjct 30953 TTCCTTTTG-AATGTTATAGTCGGATAGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAA 31011 Query 563342 AAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTG 563401 |||| | || || || |||||||| || ||||| |||||||||||||| || || Sbjct 31012 AAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCCTTATCTTGAATTTTCGCCTTCACAT 31071 Query 563402 CCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTA 563460 || || ||||||| || ||| || ||||||| ||| || || || | ||| || Sbjct 31072 TTTCTATCGTATCAGATGGCTCTAC-CTCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTC 31130 Query 563461 ACGAAAATTTGCAT 563474 |||||||||||||| Sbjct 31131 ACGAAAATTTGCAT 31144 Score = 89.7 bits (98), Expect = 4e-12 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || ||||| || | ||||||||| ||| || ||| ||||| || | ||| || Sbjct 31607 CCTTAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGCGT 31666 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 ||| |||||| || || || || || || || | | ||||||||||| || ||||| Sbjct 31667 TCTGCCATCTTCCAGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGGGGGATTCC 31726 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 ||||| || |||||||| || || |||||| || || | | | || || | Sbjct 31727 CTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATCGTGTCCG-ACGGCTCCACCTCCA 31785 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||| || || || || ||||| ||||| || ||||| Sbjct 31786 GCGTGATAGTCTTCCCGGTTAGCGTTTTCACGAAGATCTGCAT 31828 Score = 86.0 bits (94), Expect = 5e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || |||||||| || || || || || ||| ||||| || | ||| |||||| Sbjct 31158 CGAAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCG 31217 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || || |||||||| |||||||| | | || || || ||||||||||| ||||| Sbjct 31218 TCCTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTG 31277 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAAC 563438 || || || ||| ||| || ||| || | || | || ||| ||| || || | Sbjct 31278 TCCTGGATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTAC-TTCTAGCGTGAT 31336 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || || | || || |||||||||||||| Sbjct 31337 GGTTTTCCCTGTCAACGTCTTCACGAAAATTTGCAT 31372 >seq139 Length=2242343 Score = 100 bits (110), Expect = 2e-15 Identities = 352/543 (65%), Gaps = 5/543 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || ||||| ||| ||| || ||||| | || |||| ||| Sbjct 1264049 GCCATCGGCATCGATCTGGGCACCACGTATTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 1263990 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| || || || ||| | || || || ||||| ||||||| Sbjct 1263989 GTGGAGATCATCGCCAACGACCAGGGAAACCGCACCACGCCCAGCTATGTGGCTTTCACC 1263930 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | |||| ||||| || || | || | | || || ||||| Sbjct 1263929 GATACGGAGCGCCTCATTGGGGATGCTGCCAAGAACCAGGTGGCGATGAACCCCACCAAC 1263870 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | || || | | | | |||| | || || ||| | Sbjct 1263869 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCG 1263810 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || |||||||||||||| |||| | || || | ||| || || | || || | Sbjct 1263809 GACATGAAGCATTGGCCCTTCCGCGTAGTGAACGAGGGTGGCAAGCC-CAAGGTGCAGGT 1263751 Query 550292 ACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 |||| | | || | || | ||||| | || || ||||| | | Sbjct 1263750 GGAGTACAAGGGCGAGATGAAGACCTTCTTTCCAGAGGAGATCAGCTCCATGGTGCTTAC 1263691 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTAC-GGATGCAGTAATAA 550409 || ||||| | | || |||| | ||| |||||| | | | | || || || | Sbjct 1263690 CAAGATGAAGGAGATCGCTGAGGCTTAT-CTGGGGAAGAAGGTGCAGAACGCTGTTATCA 1263632 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || |||||||| || || || || || ||||||||||| || Sbjct 1263631 CAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCATCA 1263572 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| |||||||| | ||||| ||||| || || || || ||||| |||| ||||| | Sbjct 1263571 CTGGCCTTAATGTGATGCGTATCATCAACGAGCCCACAGCAGCTGCTATTGCCTATGG-C 1263513 Query 550530 TTG 550532 ||| Sbjct 1263512 TTG 1263510 >seq479 Length=216575 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 563265 TACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 ||| |||||||||||| ||| || || ||||| |||| ||||| || ||||| Sbjct 29623 TACCAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTC 29682 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 ||||| || || || |||||||| || || || || ||||||||||| || || ||||| Sbjct 29683 CAGTTGCTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTG 29742 Query 563385 AATTTT 563390 |||||| Sbjct 29743 AATTTT 29748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027055336195810