Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq33 114 1e-20 seq23 100 2e-16 >seq33 Length=5235935 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| |||||||| || |||||||||||||| || || || || |||| ||| Sbjct 587766 CATGTCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGCCCCAAGTC 587825 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 |||||||| ||| | || ||| || |||| || || | || || || || || Sbjct 587826 CCCCTCTTCTCTGGTGTAAAACCCCTGTTTATCCAGGAACTCACGTGACCCATTAGCATC 587885 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 ||| |||||||| ||||| | ||||||||||||| ||||| || || Sbjct 587886 CCAAATCTTTACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 587933 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 584716 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGC 584775 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| || || ||||||||||| || || || || || || || | Sbjct 584776 ACTCCTAGTCCCATATCTCCAGACCTCTGGTACAGTTGGCAAGACAGTTCACCATTCAGA 584835 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | | ||||| || || | |||||| || Sbjct 584836 ACATAGAACTGGCAGAGAGCATGGCAAGGTGGCAAAGCCATCAG 584879 >seq23 Length=5954011 Score = 100 bits (110), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 112105 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 112164 |||||||||||||| |||| || || || ||| ||||||| | |||||| || || ||| Sbjct 3155878 AGCTCCCTGCTGAGCACTATATTAATTCTATCTTTCAGAGGACGATTCTTCTCAGGAATG 3155819 Query 112165 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||||| || ||| ||||||||||||| | ||||| || ||| Sbjct 3155818 GAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 3155774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408406601236037