Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1287 141 7e-29 seq479 140 3e-28 seq6222 132 4e-26 seq555 89.7 4e-13 >seq1287 Length=55868 Score = 141 bits (156), Expect = 7e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || |||| || | ||| || |||||||||||||| || || || ||||| || || Sbjct 31602 CCACCCCTTAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTC--CG 31659 Query 101303 ATA--GTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 ||| |||||| |||| |||| ||||| || || |||||||| ||||| ||||| || | Sbjct 31660 ATAGCGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGGG 31719 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || ||||| || |||||||| || || | || | ||||| |||| |||| Sbjct 31720 GGATTCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATCGTGTCCGACGGCTCCA 31779 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || |||| || || ||||||| ||||| || || |||||||| Sbjct 31780 CCTCCAGCGTGATAGTCTTCCCGGTTAGCGTTTTCACGAAGATCTGCAT 31828 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || ||||| || || ||||| ||||| || || || |||| | ||||| | || Sbjct 30933 AACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGATAGCGTTCTTCCGTCC 30992 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | ||| || || ||||| ||||| |||||||| || || || |||||||| |||||| Sbjct 30993 TCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCCTTATCT 31052 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 |||||||| || ||| |||||| || ||||| | || || || ||||| | || Sbjct 31053 TGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACCTCCAGAGTAATAGTC 31112 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||||| || || || || ||||| Sbjct 31113 TTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | || || | || | ||| | || ||||| || || |||||||| || Sbjct 31372 TTCCTCCACGCAACCGCAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTC-- 31429 Query 101301 CGATAGT--TCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 ||||||| |||| |||| |||| ||||| || || || || | || || || || || Sbjct 31430 CGATAGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGG 31489 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 |||||||||||| || || |||||||| || ||| | || | ||||| |||| ||| Sbjct 31490 CGGAATGCCTTCCTTGTCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTC 31549 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||| || | || | ||| || || || ||||| || || || || |||||| Sbjct 31550 CACCTCCAACGTTATCGTCTTCCCTGTCAAAGTCTTCACGAAAATTTGCATG 31601 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | || || | || | || || || || || || || || ||||| || Sbjct 31144 TTCCTCCCCGCAATCGAAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTC-- 31201 Query 101301 CGATAG--TTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 |||||| |||| | || || | || || |||||||| |||||||||||||| || || Sbjct 31202 CGATAGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGG 31261 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| || ||||| || || || ||| ||| ||| | |||| | ||| || | ||| Sbjct 31262 AGGAATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTC 31321 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || |||| ||||| || || || || || || || || ||||| Sbjct 31322 TACTTCTAGCGTGATGGTTTTCCCTGTCAACGTCTTCACGAAAATTTGCAT 31372 >seq479 Length=216575 Score = 140 bits (154), Expect = 3e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||||||||| || || || ||||| || | || ||| ||| | || |||| ||| Sbjct 29629 ATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTCCAGTTG 29688 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| ||||| || || | | |||||| ||||| ||||| || || || ||||||||||| Sbjct 29689 CTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTGAATTTT 29748 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| |||| | ||||| || | ||| |||||||| |||| || || || || Sbjct 29749 GGCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGATGGTCTTCCCTGT 29808 Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || |||||||| || Sbjct 29809 GAGGGTCTTGACGAAGATCTGCATCGT 29835 >seq6222 Length=16261 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | || ||||| |||||||| || || ||||| |||| Sbjct 1021 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 962 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || ||||| |||| | ||| ||||| || ||| Sbjct 961 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGA 902 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| ||||| || ||| | |||| |||||| | || || Sbjct 901 ATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACC 842 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||||| || ||||| || || ||||| || || ||||||||| Sbjct 841 TCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCATG 794 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 ||| ||||| || | ||| | || | || ||||| || || || || || ||||| || Sbjct 1253 ATTGCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 1194 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 || | || | |||| |||| ||||| || ||||| |||| | ||| |||||||| Sbjct 1193 GGACAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGG 1134 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 |||||||||||||| ||||| || || || || |||| | |||||| | || Sbjct 1133 AGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTC 1074 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| |||| || ||||| || | ||||| ||||| ||||||||| Sbjct 1073 AACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 1022 Score = 109 bits (120), Expect = 4e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | || ||||| |||||||| || || ||||| || | Sbjct 565 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 506 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || |||| ||||| || || || |||| | ||| |||||||| ||| Sbjct 505 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 446 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| || || || ||| | |||| ||||| | || || Sbjct 445 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACC 386 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 ||||| |||| || ||||| || | || || ||||| ||||||||| ||| ||||| Sbjct 385 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTTAACTGAAGA 326 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | || ||||| || || || || || ||||| || | Sbjct 793 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 734 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || |||| ||||| || ||||| |||| | ||| |||||||| ||| Sbjct 733 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 674 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| || || ||||| |||| | |||||| | || || Sbjct 673 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACC 614 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || ||||| ||||||||| Sbjct 613 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 566 >seq555 Length=166230 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 ||||||||||| | || ||| ||||| |||||| | | ||| ||| | ||||||| Sbjct 108356 ATTGAATTTTCTCTGGCATCCTGCAAAAGTCATGTACCTAACTTTCCCAAATATTGGTCT 108297 Query 13711 CTCCATCCAGGCACGATCGTG-AGTTCCGCATATTGACCACATGCAACCGGCATAACCGT 13769 ||| | | | ||||||| || | || |||||||||||||| ||| | || || | Sbjct 108296 CTCTTTAAAAGGTTGATCGTGCAGAGCGGCG-ATTGACCACATGCATCCGACGTATCCAT 108238 Query 13770 TGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGC 13815 ||||||| || |||| |||||||||||||| || ||||| || Sbjct 108237 TGGGATCAGTGCCGTCCAGGCTGTATTTGTCGTTTAAGTATATAGC 108192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396073772855733