Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1287 102 6e-17 >seq1287 Length=55868 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48551 CCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATC 48610 ||||| ||||| ||| | || || || ||||||||||| || ||||| ||| | Sbjct 31385 CCGCAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCGATAGTGTTCTGCC 31444 Query 48611 GTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTT 48670 || |||| |||||| || || || || || || || || || | |||| ||| ||||| Sbjct 31445 ATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCGGAATGCCTTCCTT 31504 Query 48671 GTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 ||| ||| || || ||| | | | ||||||| |||||||||| ||| || Sbjct 31505 GTCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCCACCTCCAACGTTAT 31564 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || |||||||| || || ||||| ||||| Sbjct 31565 CGTCTTCCCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||||||| || | ||||| || || || || || ||||| ||||| || || Sbjct 31601 GCCACCCCTTAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGA 31660 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| ||| | || |||| |||||| || || ||||||| ||||| ||||| | ||| Sbjct 31661 TAGCGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGGGG 31720 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||| ||||| ||| || || || | | | || |||| |||||| Sbjct 31721 GATTCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATCGTGTCCGACGGCTCCAC 31780 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||| || || || || || | ||||| || || |||||||| Sbjct 31781 CTCCAGCGTGATAGTCTTCCCGGTTAGCGTTTTCACGAAGATCTGCAT 31828 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| | |||||||||||| || || || |||||||| || || || ||| Sbjct 30918 CCACCACGTAGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGAT 30977 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| |||| || | || || || ||||| |||| ||||||||| || | || Sbjct 30978 AGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGG 31037 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || ||| || || ||| | | | || || | ||| ||| Sbjct 31038 ATGCCTTCCTTATCTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACC 31097 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || ||||| || || ||||| ||||| Sbjct 31098 TCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380740894418187