Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq231 127 4e-24 seq249 111 3e-19 seq1099 107 4e-18 seq214 96.9 6e-15 seq13 93.3 8e-14 seq3126 86.0 1e-11 >seq231 Length=1120191 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||||||||| || || || | | ||||| || ||| Sbjct 744323 AGCACCTTCTGCTTGAGCTGGGCCACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCCAGC 744382 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| ||||||||||| || | |||||| |||||| Sbjct 744383 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATGCGCTCCAGT 744442 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | ||||||||||| ||| || | |||||||| || | || || ||||| ||| Sbjct 744443 TTCCTTTTGCGGCATTTGGAGGCGGCGATGCGGTTCCTCAGCCGTTTCCGCTCCGCTTTG 744502 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 744503 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 744535 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||||||||| || || || | | ||||| || ||| Sbjct 748887 AGCACCTTCTGCTTGAGCTGGGCCACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCCAGC 748946 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| ||||||||||| || | |||||| |||||| Sbjct 748947 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATGCGCTCCAGT 749006 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | ||||||||||| ||| || | |||||||| || | || || ||||| ||| Sbjct 749007 TTCCTTTTGCGGCATTTGGAGGCGGCGATGCGGTTCCTCAGCCGTTTCCGCTCCGCTTTG 749066 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 749067 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 749099 >seq249 Length=953666 Score = 111 bits (122), Expect = 3e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| || ||||||| |||||||||||||| |||||||| ||||| || | ||||||||| Sbjct 183299 CTTCAGTGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCTCCGGCGGCA 183240 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | |||||||| || | ||| || |||||||| | ||| ||||| Sbjct 183239 CTTGGAGGCCGCGATACGGTTCCGAAGCCGCTTGCGCTCCGCCTTCAGGCGCTCCTGACT 183180 Query 241609 CTCCATGTCGATCGGAGAC 241627 ||||| || | ||| ||| Sbjct 183179 CTCCACATCCAGCGGTGAC 183161 >seq1099 Length=64186 Score = 107 bits (118), Expect = 4e-18 Identities = 306/461 (66%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 213192 GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||||||||||| |||| |||||||||||||| ||| ||| || || | |||||| Sbjct 43204 GCCAGCTCGCAGCTGGCCTCAAGGGCAGCGTAGTAAATGCATTCGAAAATATTCCTGTTC 43263 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCAT----CATCATGCGTTGGAACACATCAGC 213307 | || |||| || || | || || || || || ||| | | |||| ||||||| Sbjct 43264 AATCTCCTGGCTTC-GGCGCTGTCAAAGGGATACCGCAGCAT-CAT--GAACGCATCAGC 43319 Query 213308 CAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCT 213366 || ||||| || || | |||||| || | ||| |||| ||| |||| | || || | Sbjct 43320 AAGGCCCTGAACACCCAGGCCGATAGGGCGGTGCCTCATGTTGCTCTTGCGCGC-TTCTT 43378 Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA 213426 | || ||| |||| | |||||| | ||| | |||||| || || |||||| || Sbjct 43379 GGACAGGATAATAGTTCCTGTCGATAACGCAGTTCAAGTTGCGCGTCGCGACTTTGACGA 43438 Query 213427 CATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGG 213486 || | | |||| ||||| | || | ||||||| ||| |||| Sbjct 43439 CAGCTTTTAATTTGTCGTAGTTGAAAGTTTTCGTTTCGCGATCAACAAACTTAGGAAGGG 43498 Query 213487 CGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGG 213546 | | |||| |||||| || || || || | | || ||||||| || || | Sbjct 43499 AAAGGGACGCCAAGTTGCACACAGCGACTTCGTCCTTGCTCGTATACTCCACAATTTCTG 43558 Query 213547 TGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA- 213605 | || | ||||| | | |||||||||||||||| ||| ||| ||| | | ||| Sbjct 43559 TACATAAATTGCTACCTTTAATGGTGCCCAGGTTCTTTTGG-TTGCTTTTTCTATTGCAG 43617 Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 | ||||||||| | |||||| || | ||| ||||| | ||| Sbjct 43618 GCATCCTTGTACAACATGTACGGCGTCCCTGTCTCGATCTG 43658 >seq214 Length=1293776 Score = 96.9 bits (106), Expect = 6e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| ||| || || || || | ||| || || ||| ||||| |||| | | | Sbjct 78095 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 78036 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| |||| ||| || | || ||||| |||||||||||| |||||||||| Sbjct 78035 TCCTCCTTCCCAGTGTTCTTCTTTAAGTCCAGAAACTCAAAGATGTCCAGGTGCCACGGC 77976 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || ||||||| Sbjct 77975 TCCAGGTAGATGGCAAAAGCCCCAGGCCTCT 77945 Score = 93.3 bits (102), Expect = 8e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| ||||| |||||||| ||||||||| |||||| ||||||||||| || Sbjct 79368 GTATACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAGGTTCTGCTGA 79309 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| ||| || ||||| |||||||| || | || ||||| ||| Sbjct 79308 TTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCCGTCTGC 79249 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688 ||| | | || | |||||| | | |||||| ||||| Sbjct 79248 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCAC 79208 >seq13 Length=6753490 Score = 93.3 bits (102), Expect = 8e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 38965 GCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTAC 39024 ||||||| | |||||||||||| |||||||| || |||||||| ||||||||| ||| | Sbjct 5177013 GCTCCCAGCGGTTGGCGGAGAACAGCAGGTGCACGGCGTGGTCCTCCAGCTCCCTCTCCC 5176954 Query 39025 TCTCCAGGTACGAGCTGATCA 39045 || ||||||| | |||||||| Sbjct 5176953 TCGCCAGGTAGGCGCTGATCA 5176933 >seq3126 Length=28506 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 |||||||| | || || || ||| |||||||| | || || | || ||||||||| Sbjct 15050 CTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTCAGCCAGAAA 14991 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| || ||||||||||| ||||||||||| |||||||| || || || Sbjct 14990 ATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGC 14941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931039448584960