Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1099 102 2e-16 seq214 98.7 2e-15 seq647 93.3 8e-14 >seq1099 Length=64186 Score = 102 bits (112), Expect = 2e-16 Identities = 135/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC-CTGAAAGAGATCTC 222080 |||||| |||| || | |||||||||||| || ||||||| || | |||| ||||||| Sbjct 43906 GTTGTCGCTGACTCTTTCCATGAAGAGGTCTGGAATCCACAAAGCACCGAAA-AGATCTC 43964 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 | | | | |||| || ||||| ||||||||| | || | ||| ||||||||||| Sbjct 43965 TCGCTCTCCGCTCTTCTTTGCCGTGGTTTTTCCTTAAGTCTAGAAAGTCAAAAATGTCGT 44024 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGC-GCCGGGTCGCTTGTTGCCACCCTGATCC 222199 ||||| ||||||| ||| | |||| ||| || |||||| ||| ||||||||| Sbjct 44025 AATGCCAAGGCTCCAAATATATAGCCA-AGCTTCCTTTTCGCTTTCCGCCTCCCTGATCC 44083 Query 222200 AC 222201 || Sbjct 44084 AC 44085 >seq214 Length=1293776 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || |||| ||| ||||| || || ||||| || || || || || Sbjct 78108 CTGGTTGGTTTCAACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTC 78049 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||||||| || |||| ||| | | |||| ||||||||| ||||| Sbjct 78048 TCTGGCACGCTGCTCCTCCTTCCCAGTGTTCTTCTTTAAGTCCAGAAACTCAAAGATGTC 77989 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 ||||||||||||||| |||| ||| | ||| || || Sbjct 77988 CAGGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGG 77950 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 |||||||| ||| ||||||||| | |||||||| || || |||||||| ||||||||| Sbjct 79383 ACCTCGTCTTTGCTGGTATACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTC 79324 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | ||||| ||| | ||| || ||| ||||| ||||| | || | Sbjct 79323 CCCAGGTTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTG 79264 Query 221852 CCAGTCTCC 221860 ||||||||| Sbjct 79263 CCAGTCTCC 79255 >seq647 Length=124777 Score = 93.3 bits (102), Expect = 8e-14 Identities = 127/167 (76%), Gaps = 8/167 (5%) Strand=Plus/Plus Query 25878 GCGGCTGGTAGCCTTT-GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCC 25935 || || ||| |||||| ||||| || ||||||||| |||| ||||| || |||| || Sbjct 8576 GCTGCAGGTGGCCTTTTGCTGC-GTTGAGGGCATCCTTTTTAGCGGGAGTTTCTGCG-CC 8633 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGCTGTAC-TTTTCCAACGAGCTCA 25993 |||| ||||| ||| | | | ||| | |||| || || ||| ||||| |||||||| | Sbjct 8634 ATCTATTGGCTGAAGAA-ACGAGGATTAATGCCGGGACT-TACGTTTTCGAACGAGCTAA 8691 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || ||||||||||||| | || ||||||||| ||||| || ||| Sbjct 8692 TCTCCAGGGACGAGGGTTTACATGCAGATTTTGCTTGCCTACTGTAC 8738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928352872183360