Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4212 174 1e-37 seq479 113 3e-19 seq1287 109 4e-18 seq163 91.5 1e-12 >seq4212 Length=22462 Score = 174 bits (192), Expect = 1e-37 Identities = 367/545 (67%), Gaps = 7/545 (1%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 |||||||| | || || || ||| || || | ||| ||| |||||| | || ||| Sbjct 18877 GGTATTGACCTGGGGACCACGTACTCGTGCGTTGGTGTGTGGAAAAATGACACGGTGGAA 18936 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || || || || ||||| || ||| | || || || || || || | || || || || Sbjct 18937 ATCATAGCGAACGACCAGGGCAATCGCACGACGCCCTCGTACGTGGCGTTCACGGACACG 18996 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| ||| | || ||||| || ||| | |||| ||| || || | ||||| ||| Sbjct 18997 GAACGACTTGTCGGGGATGCCGCGAAAAACCAAGTAGCACGCAACCCAGAAAATACAATT 19056 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || ||||| ||| | ||||| || || || || ||||| | | || || ||||| ||| Sbjct 19057 TTCGATGCGAAACGCTTGATCGGCCGCAAGTTCGATGACCCGTCGGTGCAGTCTGACATG 19116 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTT---GGTGGTAAACCATATATAGAAG--CAA 474629 || ||||| || || || || || |||| ||||| || |||| || Sbjct 19117 AAACACTGGCCGTTCAAAGTAATCGCTGGCAAAGGTGACAAACCGCTGATTGAAGTGCAT 19176 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 ||| ||| || || || || || || | ||||| | ||||| | | || Sbjct 19177 TACCA--AGGAGAGACGAAGTGCTTCCACCCTGAGGAGATTTCGGCGATGGTGCTGGGCA 19234 Query 474690 AAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTG 474749 | ||||| | | | || || || ||||| | ||| | || || || || || | Sbjct 19235 AGATGAAGGATATCTCGGAATCGTACCTTGGCCGCCCAGTGAAAGAAGCGGTGATCACGG 19294 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 | || ||||| ||||||||||| || || || || |||||||| ||||||| ||||||| Sbjct 19295 TGCCGGCATACTTTAATGATTCACAGCGCCAGGCCACTAAAGACGCGGGAACGATTGCAG 19354 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 || | || || | || || || || |||||||| ||||| ||| |||| |||||||| | Sbjct 19355 GTTTGAACGTCCTTCGCATCATCAACGAACCAACTGCAGCTGCAATTGCATATGGTCTGG 19414 Query 474870 ATAAG 474874 | ||| Sbjct 19415 ACAAG 19419 >seq479 Length=216575 Score = 113 bits (124), Expect = 3e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 480563 TACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTC 480622 ||| |||||||| ||| ||| || | || || |||| ||||| ||| ||||| Sbjct 29623 TACCAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTC 29682 Query 480623 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTG 480682 |||||||| || || |||||||| | ||||| || ||||||||||| ||||||||||| Sbjct 29683 CAGTTGCTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTG 29742 Query 480683 AATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTT 480742 ||| || || ||| ||| || || || | | | ||||||||| || || || Sbjct 29743 AATTTTGGCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGATGGTCTT 29802 Query 480743 ACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| ||||| || || Sbjct 29803 CCCTGTGAGGGTCTTGACGAAGATCTG 29829 >seq1287 Length=55868 Score = 109 bits (120), Expect = 4e-18 Identities = 132/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| || | ||| ||||| || || ||||| ||||| |||||||| | || ||| Sbjct 30966 TTATAGTCGGATAGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGT 31025 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || |||||||| || |||||||| |||||||| || || ||| ||| || |||||| Sbjct 31026 TGGTCAGGAGGGATGCCTTCCTTATCTTGAATTTTCGCCTTCACATTTTCTATCGTATCA 31085 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | | | || | |||||||| || ||||| | |||||| ||||||||||| Sbjct 31086 GATGGCTCTACCTCCA-GAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTG 31141 Score = 86.0 bits (94), Expect = 4e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 || |||||||| || || || || || || || || || | ||| ||||| Sbjct 31158 CGAAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCG 31217 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || || ||||| |||||||| | ||| ||||| || ||||||||||| || ||| Sbjct 31218 TCCTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTG 31277 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || |||||| ||| ||| || || | || | || ||| || || || Sbjct 31278 TCCTGGATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTACTTCTAGCGTGATG 31337 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || | ||||| ||||||||||| Sbjct 31338 GTTTTCCCTGTCAACGTCTTCACGAAAATTTG 31369 Score = 86.0 bits (94), Expect = 4e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 480590 AACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACG 480649 || ||| || || | ||| |||||| |||||| || ||||| || || |||||||| || Sbjct 31418 AATATTGTAGTCCGATAGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCG 31477 Query 480650 TTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGT 480709 ||| || || || ||||| ||||||||||| ||||| || || ||| || || || Sbjct 31478 TTGCTGGTCTGGCGGAATGCCTTCCTTGTCCTGAATTTTCGCCTTCACATTCTCGATCGT 31537 Query 480710 ATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | || || | || || || || || || | |||||| ||||||||||| Sbjct 31538 GTCTGACGGTTCCACCTCCAACGTTATCGTCTTCCCTGTCAAAGTCTTCACGAAAATTTG 31597 >seq163 Length=1860922 Score = 91.5 bits (100), Expect = 1e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| ||||||||||||||||| ||| || | ||||| || ||| Sbjct 1167848 CCATCACGACCAGCTCTTCCTATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCA 1167907 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGC 627878 ||||| || || | | ||||| |||||| || |||||||||||||| Sbjct 1167908 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGC 1167957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266361788015612