Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq32 257 2e-63 seq30 230 3e-55 >seq32 Length=5250493 Score = 257 bits (284), Expect = 2e-63 Identities = 657/992 (66%), Gaps = 11/992 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || ||| |||| ||||| || || || |||||| || ||||| | Sbjct 417208 TGTGTCGCAAATATTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTATCGAACT 417267 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| | || |||||| || |||||| ||| |||| Sbjct 417268 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGCTCAGGTCTCCTACCCCAAACA 417324 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||||| || || | || || || |||| || ||||| | || ||||| | ||| | Sbjct 417325 CGCAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGCGCACCTTTAGACACAT 417384 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| ||||||||||||| ||||||||||| | || | ||| || || || | Sbjct 417385 CTCCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATATCAGAAACATCAT 417444 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 417445 ACTTGT-CACTAGAAGAAACAGCACCCGGGACATCAGGGATTCTCTGAATCGTTGCCCAC 417503 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || ||||| | |||| ||| Sbjct 417504 AGGTACTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCAATGAATTTGAGGATTTTGCTG 417563 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || |||| || | |||| | || ||||| || || || || || || Sbjct 417564 TTTTCCAATACGTACTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 417623 Query 160464 ATCG--GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 || | |||| | | |||||| | ||||| ||| ||||| ||| || | Sbjct 417624 ATAGGAGTATTG--AGAGGCGGTAGTTGCTTGTCTATACCTGTGTTTTTCACTTTACCAT 417681 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 | | | | | || |||||||| || || | ||||| ||| || | Sbjct 417682 CAATAATTTCATAGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTT 417741 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | | ||||| |||| | || | ||||| | || || || || |||| ||||| | Sbjct 417742 CCAAGCTGTTTTCACCTTTAAGGGCTTTCAATTTCTCTACTATTTCCTGGTTGGTCTTTA 417801 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 |||||||| | || || | |||||| | || ||||| || | || || | Sbjct 417802 TAGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCTTCTGTAGA 417861 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 | || ||||||||||||||||||| ||||| |||||||| || || ||||| || ||| Sbjct 417862 GATCTTTCATGCAATTAATATCTGCTTGCACCCGGCTCCACGAGGCATACACAACACTCT 417921 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAA 160821 ||| | |||| | |||||| ||||| ||||| || || ||||| ||| | | | | Sbjct 417922 CTAACTGGCTGGATATAAAGACATTATCAAAACATGAGACTATTCCTTTCACAG-CTGTA 417980 Query 160822 AGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 | || | || | | ||||| ||| || || | ||| || | |||||||| |||||| Sbjct 417981 AAAAAAGATTCTGGAGACTTTCTGTCAACATGGATGCAGTAAAAATTCTGAGGAGCGTAG 418040 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 |||| || || | || || | |||||| || || |||| | ||| || ||||| || Sbjct 418041 ATGGATCTCAGAAGTCTGTCCAGCATCTCAATTTTGTGATACACCACTATTGAGTAAGCA 418100 Query 160941 ATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATA 161000 || ||||| || | || || || || | | | | ||| || | | ||||| | Sbjct 418101 ATAGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCTCATCTTGGTG 418160 Query 161001 AAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| | |||| || |||||||| ||||| Sbjct 418161 AAAGAGGCACAGTCTGTTGTCATGTTAATATA 418192 >seq30 Length=5416276 Score = 230 bits (254), Expect = 3e-55 Identities = 613/930 (66%), Gaps = 34/930 (4%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| || | || || || ||||||||| |||| || || ||||||| | Sbjct 4398018 TGTGCCGCAGGTGCTGCTCGAGGCACTGGACGGCGGCGTCGTCTACTTCGGCGTCGAACT 4398077 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || || ||||| | | | || |||||| |||||| |||| |||| ||| Sbjct 4398078 TGTTGGCCAAGAGGTGGTGC---TGCCGCAGCATCCAGGCCACGTCCCCGGCCCCGTACA 4398134 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||||||| || | |||| |||| |||||||| | ||||| || | ||| Sbjct 4398135 CGCAGACGGCGCGCTGGAAGCGGCCGGTGCAGGGCGGGTAGGGCGCTCCG--CGGCTCGT 4398192 Query 160225 --CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTC 160282 | || || |||||||||||| || | | || | ||| | ||||||||| | Sbjct 4398193 GTCGCCGTCCAGGTACTGCCACTTGACCAGGCGGGGCAGCGCGTTCATGTCGGACAGCTG 4398252 Query 160283 GTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCA 160342 | | |||| | |||| ||||| ||||| ||||||||| || | || |||||||| Sbjct 4398253 GAACTTGTCGTTGTGGGGCACGGCGCCGGGCACGCCGGGCGCGCGGTTCAGCGTGGCCCA 4398312 Query 160343 CAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACC- 160401 || ||| |||||||||||||| |||||||| | ||| || | ||| ||| | || Sbjct 4398313 CACGTGCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAA----CCGCTGCGCCG 4398368 Query 160402 ---TGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGG 160458 |||| ||| ||||| ||| ||| | || | | | ||| |||||||| | Sbjct 4398369 TGGGGTCCTCCAGCACGTGCCGCACGAAGGCCCGCGTGGCCGCGATGTAGGCGCTGCCCG 4398428 Query 160459 AGAATATCGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCG-GTGTTAGA--CACC 160514 ||| || || | | | ||||| | | ||| | | || ||| | | ||| ||| Sbjct 4398429 TGAACATGGGCGAGCGGAGCGGCGGAGGCGGCTTCGCCGTGGCCGTGCGCGAGATGAACC 4398488 Query 160515 ACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT 160574 |||| || ||| | | |||||| | || ||||| || | | | Sbjct 4398489 GCTCCACTC-------GGTGGTGGTACTTCCAGCGCTCCTGCTTGTACGCCGTCGGCCTC 4398541 Query 160575 TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTC 160634 || | ||| | ||||| || | ||| | |||| ||| ||||| ||| Sbjct 4398542 TCGGACTCCATGCTGTTCTGCCCCTGCAGCACCTGCAGCGCGCGGACCATCTCCGCGTTG 4398601 Query 160635 GTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGG 160694 ||||||| || ||||| || |||||| ||| | |||||| ||| | || | || Sbjct 4398602 GTCTTGATGGGGAAGTCCGTGCCGCACGTGTTGAGCACGTAGCGCCA----GGGCACGGG 4398657 Query 160695 TC----GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTA 160750 | ||||||||| |||||| || | || ||||||| ||| ||| || ||||| Sbjct 4398658 GCTGCGCAGCAGGTCCCGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCACGAGGCGTA 4398717 Query 160751 CACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCAC 160810 ||| ||| |||| || |||||||| |||||||| ||| || | |||| || Sbjct 4398718 CACCACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCCCG 4398777 Query 160811 CACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTG 160870 ||| ||| | ||| ||||| ||||||||| ||||| || | |||||| Sbjct 4398778 CACGGCCTGCTGGAAGGCGGCGGGAGCCTTGGCGTCCACGTGGACGCAGTAGACGTTCTG 4398837 Query 160871 AGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGAT 160930 || ||||||| || | || | || |||||||||||| ||||| || |||||||| || Sbjct 4398838 CGGGGCGTAGACGGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATCACCAT 4398897 Query 160931 AGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 |||||||| || || || ||| |||||| Sbjct 4398898 GGAGTAGGCGATGGGGAAGCCGGCCTCCTC 4398927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576913497496440