Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1099 136 2e-27 >seq1099 Length=64186 Score = 136 bits (150), Expect = 2e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 25925 ACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATT 25984 ||| | ||||| || | ||||||||||||| ||| || | ||||||||||||| Sbjct 43916 ACTCTTTCCATGAAGAGGTCTGGAATCCACAAAGCACCGAAAAGATCTCTCGCTCTCCGC 43975 Query 25985 TCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGT 26044 |||||||| ||||| || || ||| |||| || |||||||| || | ||||| || Sbjct 43976 TCTTCTTTGCCGTGGTTTTTCCTTAAGTCTAGAAAGTCAAAAATGTCGTAATGCCAAGGC 44035 Query 26045 TCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCA 26104 || ||||| ||||| || || ||||||| ||||| || || ||||| ||||||||||| Sbjct 44036 TCCAAATATATAGCCAAGCTTCCTTTTCGCTTTCCGCCTCCCTGATCCACGTATCTTGCT 44095 Query 26105 GTTTCATTGAAAACT 26119 | || ||||| ||| Sbjct 44096 GCATCGTTGAATACT 44110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252909337181675