Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1099 102 1e-16 seq214 82.4 9e-11 >seq1099 Length=64186 Score = 102 bits (112), Expect = 1e-16 Identities = 303/462 (66%), Gaps = 4/462 (1%) Strand=Plus/Minus Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958 |||| ||||| || || || || ||| | ||||||||||| || || | || || ||| Sbjct 43658 CAGATCGAGACAGGGACGCCGTACATGTTGTACAAGGATGCCTGCAATAGAAAAAGCAAC 43599 Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 |||||||| |||| || || || | ||| | || || |||||| | ||||| || Sbjct 43598 CAAAAGAACCTGGGCACCATTAAAGGTAGCAATTTATGTACAGAAATTGTGGAGTATACG 43539 Query 76019 GATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAAT 76078 ||||| || ||||| ||||| ||||| || | ||||||| |||| ||| || Sbjct 43538 AGCAAGGACGAAGTCGCTGTGTGCAACTTGGCGTCCCTTTCCCTTCCTAAGTTTGTTGAT 43479 Query 76079 GAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAA 76137 || || ||||| | || || ||| | | | || ||||| | | || Sbjct 43478 CGCGAAACGAAAACTTTCAACTACGACAAATTAAAAGCTGTCGTCAAAG-TCGCGACGCG 43420 Query 76138 AAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAA 76197 || | ||| | || || ||||| || | |||||| || | ||||| ||| || Sbjct 43419 CAACTTGAACTGCGTTATCGACAGGAACTATTATCCTGTCCAAGAAGCGCGCAAGAGCAA 43360 Query 76198 TATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTG 76257 ||| | ||| | ||||| || |||||||||| || || || |||| || || || Sbjct 43359 CATGAGGCACCGCCCTATCGGCCTGGGTGTTCAGGGCCTTGCTGATGCGTTCATGATGCT 43300 Query 76258 CCGCTACGCATTTGATTCAGATGAAGCCAAGGAGA-TGAATGCTCGTATCTTTGAAACCA 76316 || || | ||||| | |||||| |||||| |||| ||| || ||| || Sbjct 43299 GCGGTATCCCTTTGACAGCGCCGAAGCC-AGGAGATTGAACAGGAATATTTTCGAATGCA 43241 Query 76317 TGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAG 76358 | || |||| |||| ||||| || || || |||||| || Sbjct 43240 TTTACTACGCTGCCCTTGAGGCCAGCTGCGAGCTGGCTGCAG 43199 >seq214 Length=1293776 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || || || | || |||||||||||||| || || || ||||| ||||| || Sbjct 79229 TGGTACGCCATCATCGAGTCGCAGACGGAGACTGGCACGCCTTACATGCTGTACAAAGAC 79288 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 |||| |||| |||||| || || |||| |||| || ||||| || ||||| ||| Sbjct 79289 TCTTGCAACAGGAAGAGCAATCAGCAGAACCTGGGGACCATCAAATGCAGCAATCTGTGC 79348 Query 75998 ACGGAAATTTTAGAGTACAC 76017 || || || | ||||| || Sbjct 79349 ACAGAGATAGTGGAGTATAC 79368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596253649282720