Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1287 143 5e-29 >seq1287 Length=55868 Score = 143 bits (158), Expect = 5e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| ||||||||||||| |||||| || || | ||||||||| |||||||| |||| Sbjct 30962 AATGTTATAGTCGGATAGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCG 31021 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||| |||||||| || ||||| |||||||| ||||| | || | |||| || || Sbjct 31022 CTGTTGGTCAGGAGGGATGCCTTCCTTATCTTGAATTTTCGCCTTCACATTTTCTATCGT 31081 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||| || || ||||| ||||| || || |||| || || || || ||||| Sbjct 31082 ATCAGATGGCTCTACCTCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTG 31141 Query 193358 CATT 193361 |||| Sbjct 31142 CATT 31145 Score = 127 bits (140), Expect = 4e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || || | |||||||||||| || || | || | ||| || ||| || Sbjct 31136 AATTTGCATTCCTCCCCGCAATCGAAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTT 31195 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| |||| |||||| || || | |||||||| |||||||| || | |||||| Sbjct 31196 GTAGTCCGATAGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTG 31255 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| ||||| ||||| || || || || | ||| | ||| || | || || Sbjct 31256 GTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTCTCTATGGAGTCTGA 31315 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || |||||||| || || ||||| ||||| | ||| || || || ||||||||| Sbjct 31316 TGGTTCTACTTCTAGCGTGATGGTTTTCCCTGTCAACGTCTTCACGAAAATTTGCATT 31373 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| || | || || |||| || | |||| || || ||| || Sbjct 31592 AATTTGCATGCCACCCCTTAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATGTT 31651 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| |||| |||||| ||| || | || || || || || || || | ||| || Sbjct 31652 GTAGTCCGATAGCGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAATATCAAGCGCTGCTG 31711 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || ||||| ||||| || || ||||| | || | || ||| || || || Sbjct 31712 ATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATCGTGTCCGA 31771 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| || || || || ||||| || || ||||||||||| || || || |||||| Sbjct 31772 CGGCTCCACCTCCAGCGTGATAGTCTTCCCGGTTAGCGTTTTCACGAAGATCTGCATT 31829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899177931784080