Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1287 140 6e-28 seq479 95.1 2e-14 seq3126 89.7 9e-13 >seq1287 Length=55868 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 ||||||| | |||| || || ||||| | ||| | || || ||| ||||| || | Sbjct 30916 TACCACCACGTAGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGG 30975 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 ||| | || | |||| || | |||||| || |||||||| |||| |||||||||||| | Sbjct 30976 ATAGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAG 31035 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || ||||| |||||||| ||||| || ||||| ||| ||||| || | |||| Sbjct 31036 GGATGCCTTCCTTATCTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTA 31095 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | || |||||||| || || || ||||| || || | ||| || |||||| Sbjct 31096 CCTCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCATT 31145 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || |||| | || | |||| || | ||||| || |||||||| || | Sbjct 31190 AATGTTGTAGTCCGATAGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAAAATCAAACG 31249 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| || || ||||| ||||| || || || || ||| ||||| ||| | Sbjct 31250 CTGTTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTCTCTATGGA 31309 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| | |||||||||||| || |||||||| || || || || || | ||| || || Sbjct 31310 GTCTGATGGTTCTACTTCTAGCGTGATGGTTTTCCCTGTCAACGTCTTCACGAAAATTTG 31369 Query 172067 CATT 172070 |||| Sbjct 31370 CATT 31373 >seq479 Length=216575 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||| ||| || || || ||||| | ||||||||||| || || ||||| || | Sbjct 29676 CGTCTTCCAGTTGCTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCT 29735 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| ||||| |||||||| || || || || ||||| ||||| || || | Sbjct 29736 TGTCTTGAATTTTGGCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGA 29795 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || || || | || || | ||| |||||||| Sbjct 29796 TGGTCTTCCCTGTGAGGGTCTTGACGAAGATCTGCAT 29832 >seq3126 Length=28506 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 39167 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 39226 ||||||| |||||| | ||| |||||||| ||||| || || ||||| || |||||||| Sbjct 15042 TTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTCAGCCAGAAAATTGATGC 14983 Query 39227 AAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTA 39270 |||| | ||||||||| || || ||||| |||||||||| Sbjct 14982 AAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGCTA 14939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904656628660200