Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq232 170 2e-36 seq146 170 2e-36 seq40 170 2e-36 SEQ11437 127 2e-23 SEQ19046 120 4e-21 SEQ17121 120 4e-21 seq6897 109 7e-18 seq1568 95.1 1e-13 seq647 93.3 5e-13 SEQ22171 87.8 2e-11 >seq232 Length=1115936 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 27925 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 27866 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 27865 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 27806 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 27805 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 27746 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 27745 GCACCTGCTTCAGCACCTTGTA 27724 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 36296 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 36355 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 36356 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 36415 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 36416 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 36475 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 36476 GCACCTGCTTCAGCACCTTGTA 36497 >seq146 Length=2083326 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 16608 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 16667 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 16668 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 16727 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 16728 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 16787 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 16788 GCACCTGCTTCAGCACCTTGTA 16809 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 34954 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 34895 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 34894 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 34835 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 34834 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 34775 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 34774 GCACCTGCTTCAGCACCTTGTA 34753 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 8463 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 8404 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 8403 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 8344 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | || ||||||||| |||||||| Sbjct 8343 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCTTTAGACGAGATGCCCGTGTCGGGGT 8284 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 8283 GCACCTGCTTCAGCACCTTGTA 8262 >seq40 Length=4924383 Score = 170 bits (188), Expect = 2e-36 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| | || Sbjct 3966151 GCTTGGCCAGCTCACCGGGCAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGCGAGGTGA 3966092 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 3966091 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCACCCGCGATGCGCTCGAAGA 3966032 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 3966031 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 3965972 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||| || ||||||||||||| Sbjct 3965971 GGACCTGTTTCAGCACCTTGTAGA 3965948 >SEQ11437 Length=8861 Score = 127 bits (140), Expect = 2e-23 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 ||||||||| |||||||||| || |||||| | ||||||| |||| |||||||| Sbjct 8857 GCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTT 8798 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 ||| ||||||||||||| ||| | |||| ||||||||| ||||||||||||||| Sbjct 8797 GACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTG 8738 Query 1254530 CTTGAGCACCTTGTA 1254544 ||| ||||||||||| Sbjct 8737 CTTCAGCACCTTGTA 8723 >SEQ19046 Length=4500 Score = 120 bits (132), Expect = 4e-21 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 147 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 88 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 87 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 28 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 |||||||||| ||||||||||||| Sbjct 27 TGTCGTTGACGAACGAGTTCATGA 4 >SEQ17121 Length=7089 Score = 120 bits (132), Expect = 4e-21 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 319 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 378 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 379 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 438 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 |||||||||| ||||||||||||| Sbjct 439 TGTCGTTGACGAACGAGTTCATGA 462 >seq6897 Length=14933 Score = 109 bits (120), Expect = 7e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 ||||||||||||||||| ||| ||||||||| | ||| |||| | | |||| | Sbjct 7873 CCCGAGAGCCGCGGCTTCGTGGAGAACTCGTACCTGGCCGGGCTCACCCCCACCGAGTTC 7814 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || |||||||||||||| ||| ||||||| |||||||||||||||||| Sbjct 7813 TTCTTCCACGCCATGGGCGGGCGCGAGGGGCTCATCGACACCGCCGTCAAGACGGCCGAG 7754 Query 509156 ACGGG 509160 ||||| Sbjct 7753 ACGGG 7749 >seq1568 Length=48041 Score = 95.1 bits (104), Expect = 1e-13 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||| | ||| || || || Sbjct 42386 GCTTGGCCAGCTCTCCAGGCAGCAGGAGCCGCACGGCTGTCTGCACCTCTCGACTGGTGA 42327 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCG-GTGCCGATGCGGTCGATC 1254461 | || | | | ||| | |||| ||| || |||||| ||||| | || |||| Sbjct 42326 TGGTTGAGTGGTGGTTGTACTGCGTCAGGCGCGAGGCCTCCAGTGCC-AGCCGCTCGAAG 42268 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||| ||||||||||||||||||| ||| | |||| |||||| |||| ||| ||| Sbjct 42267 ATGTCATTGACAAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATACCCATGTCAGGG 42208 Query 1254522 TGCACCTGC 1254530 ||||||||| Sbjct 42207 TGCACCTGC 42199 >seq647 Length=124777 Score = 93.3 bits (102), Expect = 5e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || ||||| || |||||| || ||||||||||||| || || |||||||||||| Sbjct 9558 TATTCTCCCACACGTTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGATATCAACTCCATC 9499 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || ||||||||| || | || ||| ||| ||||| | ||||||||| Sbjct 9498 CAGTCAAACGGGTTGATCGAGTGAAAGATCTTGGGAACTCCCAGCGAAGTTAGCAGGCGG 9439 Query 868820 TCGGCGACAAACTCGATGTACTGG 868843 || || |||||||||||||||||| Sbjct 9438 TCCGCCACAAACTCGATGTACTGG 9415 >SEQ22171 Length=3883 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| ||||| ||||||||||| |||||||| | |||||| |||||| Sbjct 3629 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGCCACCTGGCGCTGCTGTGCGACAC 3688 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| | |||||| || ||||| |||| || |||||| ||||||| Sbjct 3689 CATGACGTCGCGCGGACACCTGATGGCCATCACCCGGCACGGCGTCAACCG 3739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103662201445973