Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4212 255 4e-62 seq38 98.7 7e-15 seq163 96.9 3e-14 >seq4212 Length=22462 Score = 255 bits (282), Expect = 4e-62 Identities = 941/1463 (64%), Gaps = 42/1463 (3%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || || || ||||||||||| || ||||| ||||| || || || | | || || Sbjct 20315 ATGCCGTTTGCGTCCAAATCAAACGTAACTTCGATTTGTGGAACTCCCCGGGGCGCCGGA 20256 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || |||| || ||| | || ||| ||| || || || || | ||||||| Sbjct 20255 GGGATTCCATCCAGATGGAATTTACCGAGAAGATTGTTGTCCTTCGTCATCGGTCGTTCA 20196 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || ||||| | ||| || || ||| || ||||| | || || ||||| | | Sbjct 20195 CCTTCGAAGACTTGAATGAGCACACCAGGCTGGTTATCGGCGTACGTCGTAAACGTTTGG 20136 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || |||||| |||||| ||||| |||| ||| | | ||||| | ||||| || Sbjct 20135 GACTTTTTAGTAGGAATCGTTGTATTTCGCGGAATCAGCGTCGTCATCACGCCACCGGCA 20076 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 ||||||| || || ||||| || | ||||| | |||| | | || | | Sbjct 20075 GTTTCTAGCCCGAGTGAAAGTGGCGCCACATCCAAGAGGAGCAGCTGCTGTACCTGAG-- 20018 Query 281741 TCAGTT--TGACCAAC--AAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 || | ||||| | || |||||| ||||| | |||||||| || || |||||||| Sbjct 20017 --AGCTCGTGACCCCCTTAATAATAGCAGCTTGCACCGCAGCACCGTACGCGACAGCTTC 19960 Query 281797 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT 281856 |||||| |||| | | ||| |||||| ||||| || | | | | || Sbjct 19959 ATCAGGGTTAATCGACCGGCATGGTTCTTTACCGTTGAAGAATTCGGTGATGAACTGCTG 19900 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT---TT 281913 | ||| ||||| | | |||||| || || | ||||| ||| || ||| || Sbjct 19899 GATCTTCGGAATTCTGGTTGATCCACCTACGAGTACAACTTCGCTTAC---TGAACGCTT 19843 Query 281914 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC 281973 || | |||||| || || ||||| || || || || | || |||| Sbjct 19842 GTCAATGCCTGAATCTTTCAACACCTTTTCGACCGGGTCCAGTGAGTGACGGAAGTAGTC 19783 Query 281974 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA--TAATCAATTCCTTCG 282031 ||||||||||| || || | | ||| |||| | || || || |||||| Sbjct 19782 CATGCAAAGTTCTTCAAAACGCGCGCGCG--AGATGGACACTGAGTAGTCGATGCCTTCG 19725 Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAAGATAGTGCACGTTTAGCAC 282089 ||||||| || | ||| || || | || || | | | | ||||| |||| || | Sbjct 19724 TACAAAGAGTCGATTTCGATGGTTGCCTGCGTGCTGCTGGAAAGAGTGC--GTTTCGCGC 19667 Query 282090 GTTCACATGCTGTCCTTAGTCTTCGTAAGGCT------TT--TGCTGATTGATTCAAATC 282141 |||| || |||| || | |||| ||| || ||||||| | || Sbjct 19666 GTTCGCACTGGGTCCGGAGACGGCGTAGAGCTCGGCTGTTCGTGCTGATGTCCTTGCCTC 19607 Query 282142 TGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATC 282201 |||| | |||||||||| || | || || | || || ||||| || || || Sbjct 19606 TGTTCT-----TTCTCTTGAAGTCCTGCACGCAGAAATCCACCAGGCGATTGTCGAAGTC 19552 Query 282202 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAG 282261 || || ||||| | |||| || | ||| || | ||| | |||| |||||||||| Sbjct 19551 CTCGCCCCCCAAGTGGGTATCGCCGGCCGTTGCACGTACCTCAAAAATACCATCTTCAAT 19492 Query 282262 AGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 282321 || ||| |||| |||||| ||| ||||||||||| || ||||| | ||||||||||| Sbjct 19491 AGTCAACAGAGAAACATCGAAGGTGCCACCACCCATGTCGAAAATCAACACATTCATTTC 19432 Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 | | | || || |||||||| |||| ||||| ||||||||||| || || || Sbjct 19431 TCCGCAGCCGCGCTTGTCCAGACCATATGCAATTGCAGCTGCAGTTGGTTCGTTGATGAT 19372 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | || || | ||| ||||| |||| || ||||||||||| || | |||||||| Sbjct 19371 GCGAAGGACGTTCAAACCTGCAATCGTTCCCGCGTCTTTAGTGGCCTGGCGCTGTGAATC 19312 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT 282501 ||||| ||||| || || || || || || ||| | ||| |||| || || | Sbjct 19311 ATTAAAGTATGCCGGCACCGTGATCACCGCTTCTTTCACTGGGCGGCCAAGGTA--CGAT 19254 Query 282502 T--GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGC 282559 | | | | ||||| || | | | ||| | ||||| | || || | | Sbjct 19253 TCCGAGATATCCTTCATCTTGCCCAGCACCATCGCCGAAATCTCCTCAGGGTGGAAGCAC 19194 Query 282560 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACT 282616 || | || ||| || ||||||| ||||| | ||| || || ||| Sbjct 19193 TTCGTCTCTCCTTGGTAATGCACTTCAATCAGCGGTTTGTCACCTTTGCCAGCGATTACT 19134 Query 282617 TTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 282676 || || ||||| | |||||| || || || || |||||| || | | || || Sbjct 19133 TTGAACGGCCAGTGTTTCATGTCAGACTGCACCGACGGGTCATCGAACTTGCGGCCGATC 19074 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 || ||||| ||||| ||||| ||||| ||| || ||| |||| | ||| || ||| Sbjct 19073 AAGCGTTTCGCATCGAAAATTGTATTTTCTGGGTTGCGTGCTACTTGGTTTTTCGCGGCA 19014 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 || || | || |||| || || || || | || || || || || |||||||| || Sbjct 19013 TCCCCGACAAGTCGTTCCGTGTCCGTGAACGCCACGTACGAGGGCGTCGTGCGATTGCCC 18954 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 || || ||||| || ||||| || | |||||| ||| ||||| || || | || Sbjct 18953 TGGTCGTTCGCTATGATTTCCACCGTGTCATTTTTCCACACACCAACGCACGAGTACGTG 18894 Query 282857 GTTCCTAAATCAATACCAATAGC 282879 || || | |||||||| | ||| Sbjct 18893 GTCCCCAGGTCAATACCCACAGC 18871 >seq38 Length=5113197 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| || | ||||||||| || || || || ||||| | || ||| Sbjct 2806179 TTCTTGTCCAGACCATAGGCTATAGCAGCAGCTGTCGGCTCGTTGATAATCCGCAGCACA 2806120 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||| |||||||| ||||| || | || || ||||||||||| Sbjct 2806119 TTGAGCCCTGCAATGGTTCCAGCATCTTTTGTGGCCTGCCGCTGGGAGTCGTTAAAATAG 2806060 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||| | || |||| Sbjct 2806059 GCTGGTACAGTGACTACAGCAT 2806038 >seq163 Length=1860922 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 1167973 TGTTGTAGCTACGGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 1167914 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| |||||||||||||| || ||||| ||||| Sbjct 1167913 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATAGGAAGAGCTGGTCG 1167854 Query 131296 TGATGG 131301 |||||| Sbjct 1167853 TGATGG 1167848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738550261151394