Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1287 176 9e-39 seq6222 170 4e-37 seq479 154 3e-32 seq236 132 9e-26 seq1 131 3e-25 >seq1287 Length=55868 Score = 176 bits (194), Expect = 9e-39 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || || ||||| ||||| || || || ||||| || ||||| |||| ||||| || Sbjct 30936 ACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGATAGCGTTCTTCCGTCCTCG 30995 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||||||||| ||||| || | || ||||| || ||||| || ||||||||||||||| Sbjct 30996 AGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCCTTATCTTGA 31055 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || || || |||||||| ||||||||| || ||||| |||| ||| || |||||| Sbjct 31056 ATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACCTCCAGAGTAATAGTCTTG 31115 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| || || || |||||| Sbjct 31116 CCGGTTAAAGTCTTCACGAAAATTTGCATT 31145 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | ||| ||||| || | |||| ||| ||||| ||||| ||||| || || ||| Sbjct 31374 CCTCCACGCAACCGCAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCGAT 31433 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| || ||||| || || || || || || || || | ||| || ||||| || Sbjct 31434 AGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCGGA 31493 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || ||||| || || || ||||| || ||||| || ||||| || Sbjct 31494 ATGCCTTCCTTGTCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCCACC 31553 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||||||||| |||||||| ||||| || || || ||||| Sbjct 31554 TCCAACGTTATCGTCTTCCCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | ||| || || || | ||| || || || || ||||| || || || || ||| Sbjct 31146 CCTCCCCGCAATCGAAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAT 31205 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| ||||| || || |||||||| ||||| || | | ||||| |||||||| Sbjct 31206 AGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGA 31265 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || || ||||||||||| ||||| || || | || ||||||||| Sbjct 31266 ATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTACT 31325 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || |||||||||||||| || || || |||||| Sbjct 31326 TCTAGCGTGATGGTTTTCCCTGTCAACGTCTTCACGAAAATTTGCATT 31373 >seq6222 Length=16261 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| |||||| || | |||||| || || || ||||| || || || ||||| Sbjct 793 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 734 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||||||||| || || || ||||| ||||| Sbjct 733 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 674 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| ||||| || ||||| |||||||| || ||| | || || || Sbjct 673 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACC 614 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 613 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 567 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| |||||| || | |||||| || ||||||||||| || || || ||||| Sbjct 565 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 506 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||| ||||| || || || ||||| ||||| Sbjct 505 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 446 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| ||||| || || ||||| || || || || |||| || || Sbjct 445 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACC 386 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 385 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 339 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| |||||| || | |||||| || ||||||||||| || || || || || Sbjct 1021 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 962 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || ||||||||||| || || || ||||| ||||| Sbjct 961 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGA 902 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| || || || || ||||| || || || ||| | || || || Sbjct 901 ATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACC 842 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| ||||| || || || || |||||||| Sbjct 841 TCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 795 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| |||||| || | |||||| || || || ||||| || || || || || Sbjct 1249 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1190 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || ||||||||||| || || || ||||| ||||| Sbjct 1189 AGCGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 1130 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| ||||| || || || |||||||| || ||| | || || ||| Sbjct 1129 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACT 1070 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| || || ||||| |||||||| Sbjct 1069 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1023 >seq479 Length=216575 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || |||||||| ||||| || || || ||||| ||| | || |||||||| ||||| Sbjct 29630 TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTCCAGTTGC 29689 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || || || ||||| || ||||| ||||| ||||| |||||||| || Sbjct 29690 TTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTGAATTTTG 29749 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| ||||| || || ||| ||||| | || || ||||| ||||| Sbjct 29750 GCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGATGGTCTTCCCTGTG 29809 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 29810 AGGGTCTTGACGAAGATCTGCAT 29832 >seq236 Length=1091096 Score = 132 bits (146), Expect = 9e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | || ||||| || |||||| ||||||| ||||| ||||| Sbjct 77667 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTGTTCTTCATC 77726 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || || || || |||||||| | ||||| ||||| ||||| || ||||| Sbjct 77727 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCACGTCTATCACCATTTCACCATGTTC 77786 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 ||||| | ||| | || ||||| ||| |||| || || |||| Sbjct 77787 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 77829 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| ||||| ||||| ||| ||||| | || || |||||||||||||| | ||||| || Sbjct 79574 AGCTTTTTTTGGAGCCCAGATGAATGCGTTTATTCATGTTATTATGTACATGTATTACGG 79633 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || ||||| |||| || | || || | |||||||| || || | ||||| Sbjct 79634 ATTAGCTGCCTGTGGCCCTAAAGTTCAGAAATACCTGTGGTGGAAACGATACTTGACTAT 79693 Query 60430 AATGCAATTGTTA 60442 | |||||||| || Sbjct 79694 ATTGCAATTGGTA 79706 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 80372 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 80431 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| |||| || || || || ||||||||||| Sbjct 80432 AAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCTTGTTTGGTAAC 80491 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||| | | | ||||| ||| Sbjct 80492 TTCTACTATCGGACATATAAG 80512 >seq1 Length=14292544 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| ||||| || | ||||| || || || ||||| || || || || || Sbjct 9556409 CCTCCCCTCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 9556468 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || ||||| || || Sbjct 9556469 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGG 9556528 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || || || || || | || || || Sbjct 9556529 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACC 9556588 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| || | ||||| || || |||||||| Sbjct 9556589 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 9556635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981294212343091