Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq236 141 2e-28 seq555 100 5e-16 >seq236 Length=1091096 Score = 141 bits (156), Expect = 2e-28 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | || ||||| || |||||| ||||||||||||| ||||| Sbjct 77667 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTGTTCTTCATC 77726 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || || || || |||| ||||| ||||| ||||| ||||| || ||||| Sbjct 77727 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCACGTCTATCACCATTTCACCATGTTC 77786 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||| | ||| | |||||||| ||| ||||||| || || Sbjct 77787 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 77827 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 80368 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 80427 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 || ||||||| ||| ||| || || ||||| |||| || || || || |||||||| Sbjct 80428 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 80487 Query 58789 TAACTTCTATTTTAGAACATACAAG 58813 ||||||||| | | | ||||| ||| Sbjct 80488 TAACTTCTACTATCGGACATATAAG 80512 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || || ||| ||||| | ||||| |||||||||||||| | ||||| || Sbjct 79575 GCTTTTTTTGGAGCCCAGATGAATGCGTTTATTCATGTTATTATGTACATGTATTACGGA 79634 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || || | || || | |||||||| || ||| | |||||| Sbjct 79635 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAATACCTGTGGTGGAAACGATACTTGACTATA 79694 Query 58661 ATGCAATTGGTA 58672 ||||||||||| Sbjct 79695 TTGCAATTGGTA 79706 >seq555 Length=166230 Score = 100 bits (110), Expect = 5e-16 Identities = 199/294 (68%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 182994 ACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAG 183053 ||||||| ||||| || | || | ||||||| ||| |||| | || | ||||| Sbjct 108044 ACTCGAAGCAGCAGAGACGTACGATGCCTTATGGAACGCAGCACAGCTGCAATTAATGAG 108103 Query 183054 AGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGAC 183113 || ||||| |||||| | | || || ||||||||||| || ||||| || || |||| Sbjct 108104 GGAGGGAAAGATGCATGGCTACTTGCGGATGTACTGGGCGAAGAAGATGCTCGAGTGGAT 108163 Query 183114 AAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATA----TGAACAATAAGTACGAAC 183169 | | || | ||||| | | || | ||||| | ||| | || ||| | Sbjct 108164 GAAGTCGCCTGCTGATGC----ACTCGCAGGAGCTATATACTTAAACGACAAATACAGCC 108219 Query 183170 TAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACG 183229 | ||||| || ||||| || |||||||| || || |||||||| || || | |||| Sbjct 108220 TGGACGGCACTGATCCCAATGGATACGTCGGATGCATGTGGTCAATCGCCGCTCTGCACG 108279 Query 183230 ATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTATG 183283 || | | | ||||| ||||| |||||||| || | || || |||| || || Sbjct 108280 ATCAACCTTTTAAAGAGAGACCAATATTTGGGAAAGTTAGGTACATGACTTTTG 108333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902932742135840