Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 152 5e-32 seq6222 141 9e-29 seq214 114 1e-20 seq1287 102 8e-17 seq479 87.8 2e-12 seq715 82.4 7e-11 >seq1 Length=14292544 Score = 152 bits (168), Expect = 5e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| ||| || ||| | || || ||||| Sbjct 9555976 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 9556035 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| |||| |||| |||||| ||||||||||||||||||||||| |||||| Sbjct 9556036 CTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTT 9556095 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||| | ||||| |||||||||| || | ||||| ||| || || || Sbjct 9556096 GGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTACCAGT 9556155 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| |||||||| Sbjct 9556156 GAGGGTCTTCACGAAGATCTGCAT 9556179 Score = 149 bits (164), Expect = 6e-31 Identities = 158/206 (77%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| || ||| | | | || || |||| Sbjct 9556432 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCT 9556490 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| |||||| ||||| ||||||||||||||||| ||||| Sbjct 9556491 GCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCT 9556550 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | |||||| ||||||| || || | ||||| ||| ||||||| Sbjct 9556551 TGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGG 9556610 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || ||||| ||||||||| Sbjct 9556611 TGAGGGTCTTCACGAAGATCTGCATG 9556636 Score = 134 bits (148), Expect = 1e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| | || || ||||||||||| Sbjct 9556210 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCC 9556269 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| |||| |||||| || || ||||||||||||||||| |||||| ||| Sbjct 9556270 AGCAAAAATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTT 9556329 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | |||| ||| || || |||| || Sbjct 9556330 GACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGAGTGATGGTCTTACCTGTCAAGGT 9556389 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 9556390 CTTCACGAAGATCTGCATGCCT 9556411 >seq6222 Length=16261 Score = 141 bits (156), Expect = 9e-29 Identities = 153/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || |||| ||| | || || |||||||||| Sbjct 1220 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCA-TCTTCCAGCTGCTTGC 1162 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| |||||||| |||||||| ||||| |||||| || Sbjct 1161 CAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCT 1102 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 1101 TCACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTCAGGG 1042 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| || || ||||||||| Sbjct 1041 TTTTCACAAAGATCTGCATG 1022 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| |||||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 536 GGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 477 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| |||||| |||||||| |||||||| ||||| |||||| ||| Sbjct 476 AGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTT 417 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | |||||| | ||||| || || | ||||| ||| ||||| ||||| || Sbjct 416 CACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 357 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 356 CTTCACAAAGATCTGCATG 338 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 764 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 705 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| |||||||| |||||||| ||||| |||||| ||| Sbjct 704 AGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTT 645 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| ||||||| || |||| |||| ||| ||||| ||||| || Sbjct 644 TACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGGGT 585 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || || || ||||||||| || Sbjct 584 CTTCACAAAGATCTGCATGCCT 563 Score = 120 bits (132), Expect = 3e-22 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| || ||||| ||| || ||| ||| | || || |||||||||| Sbjct 992 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAGCTGCTTGC 934 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || ||||| |||||||| ||||| ||| || || Sbjct 933 CAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCT 874 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||| || || | |||| || ||||| |||| | Sbjct 873 TCACATTCTCTATGGTGTCACTGGGCTCGACCTCAAGAGTGATTGTCTTGCCAGTCAAGG 814 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 |||| ||||| ||||||||| || Sbjct 813 TTTTCACGAAGATCTGCATGCCT 791 >seq214 Length=1293776 Score = 114 bits (126), Expect = 1e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || ||||| | ||||||||||||||||||||| |||| ||||| |||||| Sbjct 79365 TACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAGGTTCTGCTGATTG 79306 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||| |||||||| | ||| |||||||||||||| || |||||| ||| ||||| Sbjct 79305 CTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCCGTCTGCG 79248 >seq1287 Length=55868 Score = 102 bits (112), Expect = 8e-17 Identities = 146/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || || || ||||| |||||||| || | || ||| | || || |||||||| | Sbjct 31404 GTTGATTCCTTCTGAATATTGTAGTC--CGATAGTGTTCTGCCATCTTCCAGCTGCTTCC 31461 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-C 133580 ||||| |||| ||||| |||||||| || || |||||||||||||| ||| ||| | | Sbjct 31462 CCGCGAAAATAAGCCGTTGCTGGTCTGGCGGAATGCCTTCCTTGTC-CTGAATTTTCGCC 31520 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||| | |||||| | || ||||| || | || | || || || |||| | Sbjct 31521 TTCACATTCTCGATCGTGTCTGACGGTTCCACCTCCAACGTTATCGTCTTCCCTGTCAAA 31580 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || |||||||| |||||| Sbjct 31581 GTCTTCACGAAAATTTGCATG 31601 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||| || || ||||| |||| | ||||| ||||| ||||||||||||||||| Sbjct 30989 GTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCCTT 31048 Query 133565 GTCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || ||| ||| | ||| | | || | ||| || | ||||| || || | || | Sbjct 31049 ATC-TTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACCTCCAGAGTAA 31107 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| | ||| || |||||||| ||||| Sbjct 31108 TAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 >seq479 Length=216575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || || ||||| || ||| |||| |||| ||| ||||||||||| || || ||||| Sbjct 29677 GTCTTCCAGTTGCTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTT 29736 Query 133565 GTCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| ||| ||| | ||| | | || | |||||||| | || || || | ||||| Sbjct 29737 GTC-TTGAATTTTGGCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGA 29795 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || || || ||||| |||||||| Sbjct 29796 TGGTCTTCCCTGTGAGGGTCTTGACGAAGATCTGCAT 29832 >seq715 Length=106915 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 148867 ACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGC 148926 |||| || | ||| | ||||| |||| || || ||| |||| ||||||||||||| Sbjct 92548 ACTCGACCACCTCAGTGCACAAGTTGCCACACTTTATCGTCCCCAAATTCTTTTGATTGC 92607 Query 148927 TCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 |||| | ||||| ||||| ||||||| ||||||||| ||| ||||| | ||| Sbjct 92608 TCTTCTTATTGCAAGCGTCTTTGTACATCATGTACGGAGTGCCTGTTTCTATCTG 92662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483164774301560