Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq16 140 4e-28 seq30 131 2e-25 >seq16 Length=6505097 Score = 140 bits (154), Expect = 4e-28 Identities = 405/609 (67%), Gaps = 17/609 (3%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | ||| || || |||| |||| | || | |||| Sbjct 1116922 GCCAGCTCTCTTGGGGATAGAAAATCTTCCACATGGATAAAAGAGTCTGCTGGAATGTAA 1116863 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 1116862 TTCTCGTAGTTTTCTCTAGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGAGCG 1116803 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | || || ||||| | || |||||| Sbjct 1116802 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAATGAAAGGTAGAAT 1116743 Query 177126 TTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || || | ||||||| | | || |||| | ||| | || ||||| | | | Sbjct 1116742 TTGCAACTGGAGATAGTTG--GAATTAAGTTTTTATCATTGACGTAGTCTCCAAAGGCTT 1116685 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||| || ||| || || |||| ||| || ||||| ||| || || || || | Sbjct 1116684 GCCCATAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCA 1116626 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGG 177301 || || |||||| || || || ||||| ||||| || || ||||| | || || Sbjct 1116625 TGCTCAGGGTTCCAGTTACTTACAACCCAACAAACCAAGTTT-TCTTTACTTGGCAC--- 1116570 Query 177302 ATTCGATAC-TAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCC 177359 ||| ||| ||| | | | | | || | | | || ||||| ||||| |||||||| Sbjct 1116569 -TTC-ATATGTAAAGGAACCTGTACCGACCATCATGGAGCCATAAGGCACCTGAATATCT 1116512 Query 177360 GAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGG 177418 || || |||| ||| || | || || || || |||| ||| || || | ||| || Sbjct 1116511 GAATCACGTCGGTAAGTCAGGGTTAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGA 1116452 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 | | | | | || ||||| ||||||||||| ||||| || || || | ||| |||| || Sbjct 1116451 G-TATGAGTTGGAGATTCCAAGTTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTG 1116393 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | ||||| | || |||| | || |||||||| |||| || || |||| || Sbjct 1116392 CTGAGGTAAATTAGTCAGATCCCAGTTAATATCTCTGTGATGAATGAGAACTGCATGGGA 1116333 Query 177539 TTTGTAATA 177547 |||| ||| Sbjct 1116332 CTTGTTATA 1116324 >seq30 Length=5416276 Score = 131 bits (144), Expect = 2e-25 Identities = 266/389 (68%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 |||| ||| | ||||| | ||| || ||| |||| || |||||||| ||| Sbjct 4398542 TCGGACTCCATGCTGTTCTGCCCCTGCAGCACCTGCAGCGCGCGGACCATCTCCGCGTTG 4398601 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 ||||| | ||| ||||| |||||||| || | || || ||| ||| | | Sbjct 4398602 GTCTTGATGGGGAAGTCCGTGCCGCACGTGTTGAGCACGTAGCGCCAGGGCACGGGGC-T 4398660 Query 162718 CCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 || | ||| ||| | | ||||| || |||||||| | || |||||| |||||||| Sbjct 4398661 GCGCAGCAGGTCCCGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCACGAGGCGTACAC 4398720 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 |||||||||| | |||| || ||||| ||| ||| || | | || || ||| Sbjct 4398721 CACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCCCGCAC 4398780 Query 162837 GGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 |||| | ||| | |||| | ||| | || ||||| |||||||| | ||||| Sbjct 4398781 GGCCTGCTGGAAGGCGGCGGGAGC-CTTGGCG-TCCACGTGGACGCAGTAGACGTTCTGC 4398838 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 |||||||||| || | ||| | | |||||||||||| ||||| ||||| | ||| || Sbjct 4398839 GGGGCGTAGACGGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATCACCATG 4398898 Query 162955 GAATACGCTATGGGGAACTCAGCCTCCTC 162983 || || || |||||||| | |||||||| Sbjct 4398899 GAGTAGGCGATGGGGAAGCCGGCCTCCTC 4398927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578125655182400