Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6222 98.7 9e-16 seq1287 87.8 2e-12 seq214 86.0 6e-12 seq1 84.2 2e-11 >seq6222 Length=16261 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | || ||||| || |||||||||||| || ||| || | Sbjct 1009 CGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA 950 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| ||||| ||||| ||||||||||| Sbjct 949 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCTTTG 890 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| |||| | || | || || | ||||| || || | || | Sbjct 889 TCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACCTCAAGAGTGATT 830 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||||| ||||| | ||| ||||||||| || Sbjct 829 GTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCATGCCT 791 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || || |||||||||||| || || || | Sbjct 1237 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCA 1178 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| ||||| ||||| ||||||||||| Sbjct 1177 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTG 1118 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | ||| | || || | ||||| ||||| | || | Sbjct 1117 TCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATG 1058 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || |||||||| ||||| | || ||||||||| Sbjct 1057 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 1022 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || || ||||||||||| || ||| ||| Sbjct 781 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 722 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| ||||| ||||| ||||||||||| Sbjct 721 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTG 662 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | ||||| || |||| ||| | Sbjct 661 TCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATG 602 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || |||||||| || || | || ||||||||| || Sbjct 601 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 563 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | || ||||| || ||||||||||| || ||| ||| Sbjct 553 CGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 494 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | |||| || | ||| ||||| ||||| ||||||||||| Sbjct 493 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTG 434 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || || | || | Sbjct 433 TCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGATG 374 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || |||||||| || || | || ||||||||| Sbjct 373 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 338 >seq1287 Length=55868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||||||| | |||| || ||||||||||| |||||| | || | || Sbjct 30932 CAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGATAGCGTTCTTCCGTC 30991 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||| ||||| || | | | || | |||||||| || ||||| |||||||| ||||| Sbjct 30992 CTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCCTTATC 31051 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 |||||| |||| | ||| | ||||| | ||||| || || | || | || Sbjct 31052 TTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACCTCCAGAGTAATAGT 31111 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || | ||| || | |||||| ||||| Sbjct 31112 CTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 >seq214 Length=1293776 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| || || | |||||| ||||||||||| ||| |||| || ||||||||| Sbjct 79365 TACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAGGTTCTGCTGATTG 79306 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || |||| ||||| | ||||||| | |||||||| || ||| ||||| Sbjct 79305 CTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTC 79256 >seq1 Length=14292544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| || | ||| | | | ||||| || || |||||||||||| || ||| || Sbjct 9555961 CAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 9556020 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| ||||| || || | | || || | ||| ||||| ||||| |||||||| Sbjct 9556021 CCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGGATGCCTTC 9556080 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || || | |||||||| || | || Sbjct 9556081 CTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGT 9556140 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||| || || || | ||| |||||||| Sbjct 9556141 GATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 9556179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476358780750840