Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq87 123 8e-25 seq2894 116 1e-22 seq90 102 3e-18 seq3205 100 9e-18 seq258 98.7 3e-17 seq1 98.7 3e-17 SEQ11820 87.8 6e-14 seq1191 87.8 6e-14 seq539 82.4 2e-12 seq471 82.4 2e-12 >seq87 Length=3456455 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2338836 GGCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 2338895 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 2338896 CCCGGGCTTCAGC 2338908 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 2355499 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 2355440 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 2355439 CCCGGGCTTCAGC 2355427 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 2482264 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 2482323 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 2482324 CCCGGGCTTCAGC 2482336 >seq2894 Length=30284 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4764 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 4823 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 4824 CCGGGATTCAGC 4835 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| Sbjct 23907 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAAGTCCCTGGTTCAAT 23966 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 23967 CCCGGGCTTCAGC 23979 >seq90 Length=3329470 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 213374 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 213315 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 213314 TCCCGGGTTTCGGC 213301 >seq3205 Length=27865 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 9988 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 10047 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 10048 CCGGGTTT 10055 >seq258 Length=904949 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 655318 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 655259 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 655258 CCGGGTTTCGGC 655247 >seq1 Length=14292544 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 9558248 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 9558189 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 9558188 CCGGGTTTCGGC 9558177 >SEQ11820 Length=8503 Score = 87.8 bits (96), Expect = 6e-14 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCC-CTGGTTCA 2825 |||||||||||||||| |||||||| ||||||| || |||||||||||| |||||| | Sbjct 4992 TGGCTGAAGTAGCTCACCTGGGAGAGTGTTAGACTAAAAATCTAAAGGTCCTCTGGTTGA 4933 Query 2826 ACCCCGGGCTTCAGC 2840 | || |||||||||| Sbjct 4932 ATCCTGGGCTTCAGC 4918 >seq1191 Length=59421 Score = 87.8 bits (96), Expect = 6e-14 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCC-CTGGTTCA 2825 |||||||||||||||| |||||||| ||||||| || |||||||||||| |||||| | Sbjct 195 TGGCTGAAGTAGCTCACCTGGGAGAGTGTTAGACTAAAAATCTAAAGGTCCTCTGGTTGA 254 Query 2826 ACCCCGGGCTTCAGC 2840 | || |||||||||| Sbjct 255 ATCCTGGGCTTCAGC 269 >seq539 Length=171301 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| | ||||||||||||| |||||||||||||| | |||||| Sbjct 5200 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCGATCCCGGG 5257 >seq471 Length=223974 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| | ||||||||||||| |||||||||||||| | |||||| Sbjct 198717 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCGATCCCGGG 198774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15842255122005