Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq6298 113 4e-20 seq3497 96.9 3e-15 >seq6298 Length=16060 Score = 113 bits (124), Expect = 4e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 39775 CAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCA 39834 || ||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||| Sbjct 4430 CACGCGGGCATGGTCTAGTGGTTATGACGTCTGCCTTACACGCAGAAGATCCCGGGTTCA 4371 Query 39835 ATCCCCGGTGCCCGTAT 39851 ||||||||||||||||| Sbjct 4370 ATCCCCGGTGCCCGTAT 4354 >seq3497 Length=25973 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 |||||||||||||||||| |||| |||||| | ||||||||||||||||| |||| ||| Sbjct 18188 GCGGGTATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGGTCCCGAGTTCGATC 18129 Query 39838 CCCGGTGCCCGTA 39850 | ||||||||||| Sbjct 18128 CTCGGTGCCCGTA 18116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465877934479360