Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq33 113 5e-20 seq2621 104 3e-17 >seq33 Length=5235935 Score = 113 bits (124), Expect = 5e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || || ||||| | |||||| ||||||||||| |||||||| || ||||| Sbjct 584712 CTTCAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAA 584771 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || || ||||| || || |||||||||||||| ||||| || || || || | Sbjct 584772 AGGCACTCCTAGTCCCATATCTCCAGACCTCTGGTACAGTTGGCAAGACAGTTCACCATT 584831 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || |||||||| || ||||| || |||| ||||| Sbjct 584832 CAGAACATAGAACTGGCAGAGAGCATGGCAAGGTGGCAAAGCCAT 584876 >seq2621 Length=32733 Score = 104 bits (114), Expect = 3e-17 Identities = 190/274 (69%), Gaps = 17/274 (6%) Strand=Plus/Plus Query 146883 GGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGG------GGCTCCACGTGGTT 146936 ||||||||| ||||| ||||| || ||||| | || | ||| |||||||| Sbjct 27128 GGGGAAGGGCCGGGG-----TGGCC-GCAAAATTTGCTGGCTGAGTGCCTCGACGTGGTT 27181 Query 146937 GAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCAC 146996 ||||||||| | || |||| | ||| || || | | || ||| | ||| || | Sbjct 27182 CGAGTAGACGTGAGTGTTGCCCATGAAGTGAACGAATTTCTTCGCCTTCAAGCCCGTGAT 27241 Query 146997 GTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055 ||||| ||||| ||| || || |||||||| ||| ||||| || || |||||||| | Sbjct 27242 ATGGGCAACCAT-TAGCGTCAGAAGCGAGTACGAGGCGATGTTAAACGGTACCCCCAGTC 27300 Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTC---CCCGTCGGCCACGTAAA 147112 ||| || | || | ||| ||||| ||||| ||| | | ||||| | ||| | | Sbjct 27301 CCACATCACAAGATCGCTGATACAGAATGCACGTGAGTTGTTTCTCGTCGTCAACGCAGA 27360 Query 147113 ACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 | || ||| | ||||||||| ||||||||||| Sbjct 27361 ATTGCGTCAGCAGGTGGCACGGTGGCAGCGCCAT 27394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583178977461600