Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1287 138 1e-27 seq1 125 6e-24 seq6222 122 8e-23 >seq1287 Length=55868 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| |||| || ||||| ||| || || ||||| ||||| ||||| || | Sbjct 31372 TTCCTCCACGCAACCGCAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCG 31431 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || ||||||||||| ||||| || || | ||| |||||||| | | Sbjct 31432 ATAGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCG 31491 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| || ||||||||| ||| ||| | ||||| | | | | |||||| || |||| Sbjct 31492 GAATGCCTTCCTTGTCC-TGAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCC 31550 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||| ||||| || || |||||||| ||||| || || ||||| Sbjct 31551 ACCTCCAACGTTATCGTCTTCCCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| |||||||||||||| | || |||||||||||||| || |||| Sbjct 30918 CCACCACGTAGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGAT 30977 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| |||| || || || || |||||||| ||||| ||||| ||||| | ||| Sbjct 30978 AGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGG 31037 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || ||||| | | ||| ||| | ||||| | || | | ||| || | || || Sbjct 31038 ATGCCTTCCTTAT-CTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTAC 31096 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| || || || || || || ||||| ||||| || || ||||||| Sbjct 31097 CTCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCATTC 31146 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||| ||||||||||| || | | |||| | || ||| Sbjct 31620 ACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTGCCATCTTCC 31679 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| ||||| |||||||| |||||||| || | || | | ||| |||||| || Sbjct 31680 AGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGGGGGATTCCCTCTTTGTCC-TG 31738 Query 35648 ATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| | ||||| | | | |||||| || |||||||||| |||||| || || Sbjct 31739 AATTTTCGCCTTCACGTTCTCAATCGTGTCCGACGGCTCCACCTCCAGCGTGATAGTCTT 31798 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || || | |||||||| || ||||||||| Sbjct 31799 CCCGGTTAGCGTTTTCACGAAGATCTGCATT 31829 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | |||| |||| || ||||| || || ||||| Sbjct 31181 CTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAA 31240 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||| ||||| | ||||| | ||| |||||| ||||||| |||| | | Sbjct 31241 AATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATT 31300 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||| | ||| || || | |||||| ||||| || ||||| || ||||| Sbjct 31301 CTCTATGGAGTCTGATGGTTCTACTTCTAGCGTGATGGTTTTCCCTGTCAACGTCTTCAC 31360 Query 35725 AAATATCTGCATTC 35738 || || ||||||| Sbjct 31361 GAAAATTTGCATTC 31374 >seq1 Length=14292544 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 9556216 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 9556275 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| |||| || | || ||||||||| |||||| ||| | | Sbjct 9556276 AATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 9556335 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || ||||| ||||| || ||||| Sbjct 9556336 CTCAATGGTGTCACTGGGCTCGACCTCCAGAGTGATGGTCTTACCTGTCAAGGTCTTCAC 9556395 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 9556396 GAAGATCTGCAT 9556407 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| ||| | || ||||||||||| || || || Sbjct 9555988 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAA 9556047 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||| | || ||||||||| |||||| ||| | | Sbjct 9556048 AATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 9556107 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || ||||| || | || ||||| Sbjct 9556108 CTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTCAC 9556167 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 9556168 GAAGATCTGCAT 9556179 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 9556444 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 9556503 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||||||| |||||| ||| | | Sbjct 9556504 GATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 9556563 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || || || || | || ||||| Sbjct 9556564 CTCGATGGTGTCGCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 9556623 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 9556624 GAAGATCTGCAT 9556635 >seq6222 Length=16261 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 758 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 699 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || || ||||| |||||| ||| | | Sbjct 698 GATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTT 639 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || ||||| | |||||| || || || |||| || ||||| Sbjct 638 TTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCAC 579 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 578 AAAGATCTGCAT 567 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| |||| ||||||||||| || || || Sbjct 529 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 470 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | ||||| || || ||||| |||||| ||||| | | Sbjct 469 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTC 410 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||| | ||||| || || || |||| || |||||| Sbjct 409 TCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 350 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 349 AAGATCTGCAT 339 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 985 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAG 926 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| |||| ||||| || || ||||| ||| || ||||| | | Sbjct 925 ATCAGCCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTC 866 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || ||||| |||||||| Sbjct 865 TCTATGGTGTCACTGGGCTCGACCTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACG 806 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 805 AAGATCTGCAT 795 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || | || ||||||||||| || ||||| Sbjct 1214 CTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCAAA 1155 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || || ||||| |||||| ||||| | Sbjct 1154 GATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTT 1095 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || || || | ||||| || || || |||| |||||||| Sbjct 1094 TTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 1035 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1034 AAAGATCTGCAT 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450554854074520