Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq33 116 3e-21 seq3126 100 2e-16 seq45 82.4 6e-11 >seq33 Length=5235935 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||||||||| ||| | || ||||| || ||| ||||||||||||| Sbjct 584878 TGATGGCTTTGCCACCTTGCCATGCTCTCTGCCAGTTCTATGTTCTGAATGGTGAACTGT 584819 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| |||| || || || || || ||||||||||| || || || || || || | Sbjct 584818 CTTGCCAACTGTACCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 584759 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 584758 GCTATTCGCTGCTCACATACATGATTGCCCATGTCAC 584722 >seq3126 Length=28506 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | |||| || || ||||| ||||| || || |||||||| ||||| Sbjct 13359 CAAGAAGTGCAGATCACAGAGGCGCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 13418 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || || ||||||||||||||||| || || |||||||| |||||| Sbjct 13419 ATACACTCAGAAATGTACAGTCTTCTCATTGACACGTACATTAAAGAT 13466 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||||| ||||||||||| |||||||| || || ||||| Sbjct 14926 GGAGAACGTGTGGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCA 14985 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || || ||| | |||||| |||| || |||||||| | || ||||| ||||| | Sbjct 14986 TCAATTTTCTGGCTGAAGAAAAGAGGCTTAATGCCTGGACTCACTTTTTCTAATGAACTC 15045 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 15046 ATCAGTAGAGATGA 15059 >seq45 Length=4641476 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| || || ||| ||| || ||| |||| ||||| ||| Sbjct 479507 CCAGAAGCTCGTTGTTTCTATGGCTTCCAGATTCTCATTGAGAATGTTCACTCGGAGATG 479448 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 479447 TACAGCTTGCTTATAGACACTTACATCAAAGAT 479415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397250764775845