Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1099 152 6e-32 seq715 93.3 5e-14 >seq1099 Length=64186 Score = 152 bits (168), Expect = 6e-32 Identities = 314/462 (68%), Gaps = 4/462 (1%) Strand=Plus/Plus Query 110937 CTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAG 110996 || |||||| || ||||| ||||| |||| |||| || ||| ||| || ||| Sbjct 43199 CTGCAGCCAGCTCGCAGCTGGCCTCAAGGGCAGCGTAGTAAATGCATTCGAAAATATTCC 43258 Query 110997 CATTCA-TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCC 111055 |||| |||||| |||||| | ||||| | || || || || || |||| Sbjct 43259 TGTTCAATCTCCT-GGCTTCGGCGCTGTCAAAGGGATACCGCAGCATCATGAACGCATCA 43317 Query 111056 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTC 111115 || || || |||||||||| || ||||| | ||| | ||| || ||| ||||| Sbjct 43318 GCAAGGCCCTGAACACCCAGGCCGATAGGGCGGTGCCTCATGTTGCTCTTGCGCGCTTCT 43377 Query 111116 TCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT- 111174 | || |||||| | || ||||| || || | ||| | || || | | ||||| Sbjct 43378 TGGACAGGATAATAGTTCCTGTCGATAACGCAGTTCAAGTTGCGCGTCGCGA-CTTTGAC 43436 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 || | | | ||| || || | ||||| || || || ||| |||| ||||| Sbjct 43437 GACAGCTTTTAATTTGTCGTAGTTGAAAGTTTTCGTTTCGCGATCAACAAACTTAGGAAG 43496 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || | || ||||| ||||| ||||| || ||||| || ||||| | |||||| Sbjct 43497 GGAAAGGGACGCCAAGTTGCACACAGCGACTTCGTCCTTGCTCGTATACTCCACAATTTC 43556 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 ||||||||| ||| || ||||| || |||| ||||||||||| || || | ||||| Sbjct 43557 TGTACATAAATTGCTACCTTTAATGGTGCCCAGGTTCTTTTGGTTGCTTTTTCTATTGCA 43616 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||||||||||| | |||||| |||||||| ||||| |||| Sbjct 43617 GGCATCCTTGTACAACATGTACGGCGTCCCTGTCTCGATCTG 43658 >seq715 Length=106915 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||| || | ||||| | || || || | ||||| || ||| ||| || || || Sbjct 92487 ACAAACCTAGGAAGTGAGACCGACGCAAGGTTGCATACGGCCACCTCGTCTTTGCTAGTA 92546 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 |||| | | || || || |||||| || ||| |||||||||||||||||||| || Sbjct 92547 AACTCGACCACCTCAGTGCACAAGTTGCCACACTTTATCGTCCCCAAATTCTTTTGATTG 92606 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 |||||||| ||||| || || ||||| | |||||| || || || || || |||| Sbjct 92607 CTCTTCTTATTGCAAGCGTCTTTGTACATCATGTACGGAGTGCCTGTTTCTATCTG 92662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627699386402400