Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1099 134 2e-26 >seq1099 Length=64186 Score = 134 bits (148), Expect = 2e-26 Identities = 396/605 (65%), Gaps = 4/605 (1%) Strand=Plus/Plus Query 118416 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 |||| ||| |||| ||||| ||||| |||| || || ||| ||||| ||| Sbjct 43204 GCCAGCTCGCAGCTGGCCTCAAGGGCAGCGTAGTAAATGCATTCGAAAATATTCCTGTTC 43263 Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAG 118534 | | | |||| ||| || ||||| | || | ||| || || || |||| || || Sbjct 43264 AATCTCCTGGCTTCGGCGCTGTCAAAGG-GATACCGCAGCATCATGAACGCATCAGCAAG 43322 Query 118535 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCAC 118594 || || ||||| ||||| || ||||| || ||||| || ||| || || | || Sbjct 43323 GCCCTGAACACCCAGGCCGATAGGGCGGTGCCTCATGTTGCTCTTGCGCGCTTCTTGGAC 43382 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 |||||| | ||||| |||||||| | || | || || | || || || | Sbjct 43383 AGGATAATAGTTCCTGTCGATAACGCAGTTCAAGTTGCGCGTCGCGACTTTGACGACAGC 43442 Query 118655 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 | | || ||||| | ||| | || || || ||| |||||||||||| | Sbjct 43443 TTTTAATTTGTCGTAGTTGAAAGTTTTCGTTTCGCGATCAACAAACTTAGGAAGGGAAAG 43502 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 ||||||| || ||||||| | || ||||| || ||||| | |||||| || || Sbjct 43503 GGACGCCAAGTTGCACACAGCGACTTCGTCCTTGCTCGTATACTCCACAATTTCTGTACA 43562 Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834 || || || ||||||||||||| ||||||||| || ||| | || || ||||| Sbjct 43563 TAAATTGCTACCTTTAATGGTGCCCAGGTTCTTTTGGTTGCTTTTTCTATTGCAGGCATC 43622 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG-AGAATAGCCTTCCAGA 118893 |||||| | |||||| |||||||| ||||| | || | |||| | ||| || ||| | Sbjct 43623 CTTGTACAACATGTACGGCGTCCCTGTCTCGATCTGAG-CTTGTAAAATGGCGAACCACA 43681 Query 118894 CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGG 118953 | || || | ||| || | | ||| |||| ||||| | ||| || | Sbjct 43682 AGTGTTGGGCGGGAATAGTTTTCCTGCCCCTCCCTTCTTTTTCGTATGTCTCGTACAGCG 43741 Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 119013 ||| ||| || || ||| ||| |||| ||| || || || | |||||| | ||| | Sbjct 43742 CTTTAAATTCGTCTCCCCAGGCTTCTGTGAGTCCCGGGCACTCGTTTGGGCACATGAGCG 43801 Query 119014 ACCAT 119018 |||| Sbjct 43802 TCCAT 43806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618107668987640