Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq715 104 3e-17 seq1099 96.9 4e-15 >seq715 Length=106915 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 104902 CAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAA 104961 |||| |||| | || || || || || |||||| | ||||||||||| || || | || Sbjct 92668 CAAG-CTCAGATAGAAACAGGCACTCCGTACATGATGTACAAAGACGCTTGCAATAAGAA 92610 Query 104962 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGA 105021 ||| ||||||||||||||||| ||| ||| || ||| | || || || | | || Sbjct 92609 GAGCAATCAAAAGAATTTGGGGACGATAAAGTGTGGCAACTTGTGCACTGAGGTGGTCGA 92550 Query 105022 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 105081 ||||| |||||| ||| ||| || || ||||| || || || | || || | || Sbjct 92549 GTTTACTAGCAAAGACGAGGTGGCCGTATGCAACCTTGCGTCGGTCTCACTTCCTAGGTT 92490 Query 105082 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACT 105120 |||||| || | | || ||||||||||||| || || Sbjct 92489 TGTGGACCCCCAAAGCAAATCATTTGATTATGAGAAGCT 92451 >seq1099 Length=64186 Score = 96.9 bits (106), Expect = 4e-15 Identities = 238/360 (66%), Gaps = 1/360 (0%) Strand=Plus/Minus Query 104902 CAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAA 104961 |||| |||| | |||||| || || || |||||| | ||||| || ||||| || ||| Sbjct 43664 CAAG-CTCAGATCGAGACAGGGACGCCGTACATGTTGTACAAGGATGCCTGCAATAGAAA 43606 Query 104962 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGA 105021 || || |||||||| |||| || || || |||| | ||||||||||| |||| Sbjct 43605 AAGCAACCAAAAGAACCTGGGCACCATTAAAGGTAGCAATTTATGTACAGAAATTGTGGA 43546 Query 105022 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 105081 | ||| ||| || || |||||||| ||| | || || | | || || |||| Sbjct 43545 GTATACGAGCAAGGACGAAGTCGCTGTGTGCAACTTGGCGTCCCTTTCCCTTCCTAAGTT 43486 Query 105082 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 105141 ||| |||| || || || || || | || || ||| | | | || ||| | Sbjct 43485 TGTTGATCGCGAAACGAAAACTTTCAACTACGACAAATTAAAAGCTGTCGTCAAAGTCGC 43426 Query 105142 CACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAA 105201 || ||| | ||| | ||||| || || || | ||| || || | || || || Sbjct 43425 GACGCGCAACTTGAACTGCGTTATCGACAGGAACTATTATCCTGTCCAAGAAGCGCGCAA 43366 Query 105202 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 || ||||| ||||| || || || || ||||||||||| || || |||| ||||| Sbjct 43365 GAGCAACATGAGGCACCGCCCTATCGGCCTGGGTGTTCAGGGCCTTGCTGATGCGTTCAT 43306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582951897789560