Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1099 167 3e-36 seq214 84.2 2e-11 >seq1099 Length=64186 Score = 167 bits (184), Expect = 3e-36 Identities = 347/506 (69%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 78859 AGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATG 78918 ||||||||||| |||| || |||||||| || || | |||| || ||||| | |||| Sbjct 43300 AGCATCATGAACGCATCAGCAAGGCCCTGAACACCCAGGCCGATAGGGCGGTGCCTCATG 43359 Query 78919 TTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTA 78978 |||||||| || || | | | || ||| |||||| ||||| |||| ||||| ||| Sbjct 43360 TTGCTCTTGCGCGCTTCTTGGACAGGATAATAGTTCCTGTCGATAACGCAGTTCAAGTTG 43419 Query 78979 CGCGTGACGACCC-GA-GTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTT-- 79034 ||||| |||| || | || || || ||||| || | | ||| | |||| ||| Sbjct 43420 CGCGTCGCGACTTTGACGACAGCTTTTA--ATTTGTCGTAGTTGAAA-GTTTTCGTTTCG 43476 Query 79035 -GATGAAAG----TCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGG 79089 ||| || | || ||| | || || |||| ||||||||| || |||||| | Sbjct 43477 CGATCAACAAACTTAGGAAGGGAAAGGGACGCCAAGTTGCACACAGCGACTTCGTCCTTG 43536 Query 79090 CTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGAC--TTGATGGTGCCGATGTTCT 79147 || | | ||| | |||||||| || ||||| | || || |||||||| | ||||| Sbjct 43537 CTCGTATACTCCACAATTTCTGTACATAAATTG--CTACCTTTAATGGTGCCCAGGTTCT 43594 Query 79148 TCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAA 79207 | |||||||| || || ||||| |||||||| |||||||||||||||| ||||| | Sbjct 43595 TTTGGTTGCTTTTTCTATTGCAGGCATCCTTGTACAACATGTACGGCGTCCCTGTCTCGA 43654 Query 79208 CCTGACTCTTG-AGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGA 79266 |||| |||| | || | || ||| | || |||| | | | ||| || || Sbjct 43655 TCTGA-GCTTGTAAAATGGCGAACCACAAGTGTTGGGCGGGAATAGTTTTCCTGCCCCTC 43713 Query 79267 CCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGG 79326 || | | |||| ||| ||||| | | || || | || || || | || | || Sbjct 43714 CCTTCTTTTTCGTATGTCTCGTACAGCGCTTTAAATTCGTCTCCCCAGGCTTCTGTGAGT 43773 Query 79327 CCCGGGCACTCGTGCGGGCACATCAG 79352 ||||||||||||| |||||||| || Sbjct 43774 CCCGGGCACTCGTTTGGGCACATGAG 43799 >seq214 Length=1293776 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| || ||||||||||||||||| || || |||||||| || || ||| Sbjct 76633 AGCTGTTTCCTGCTGTGCATGAAGGATGACAGCATCGAAGGGATCTACGACACCCTGAAG 76692 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 ||||||| | |||||||||| | || || |||||| Sbjct 76693 CAGTGCGCCCTGATCTCCAAGTCTGCGGGTGGGATCGGG 76731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548234294409360