Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1741 105 7e-18 seq6339 98.7 1e-15 seq95 87.8 2e-12 seq45 86.0 7e-12 seq715 84.2 2e-11 seq208 84.2 2e-11 seq214 82.4 8e-11 >seq1741 Length=44818 Score = 105 bits (116), Expect = 7e-18 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 152094 GGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGT 152153 ||||||||||| ||| || |||||| ||| ||||| ||| |||| ||||| || Sbjct 17407 GGGCTCGAGGAAGTTAAGATTGTTGCTGCCGACGAAGCGCTGCGCCATCGAGACAATGGT 17466 Query 152154 GCCCTGCAGACTCGCTTCACCGTGGTGATA--CGCCGTCTGCTCCGCGATGTATCCCGCC 152211 ||| ||||| || || ||||| || || ||| | || || | || ||| ||||| Sbjct 17467 CTGCTGGAGACTGGCCTCTCCGTGATGGTAGGCGCTGACT--TCGGAGACGTAGCCCGCA 17524 Query 152212 AACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTG 152271 | ||| || || || || ||| | ||| ||||||||||| || ||| | | ||||||| Sbjct 17525 AGCTGTGCGACTTTGATTTCCTGCTTCATGTTCTTCTTGATGCATGCGAAGAGCACCTTG 17584 Query 152272 CGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGA 152312 |||||| || ||| | ||||| | || || || ||||| Sbjct 17585 CGCTGGCCGGGCTTCCAGCCGTCGATCAGCTGCGGTATCGA 17625 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430 ||||| | || ||| || |||||| ||| || ||| || |||| |||||| || Sbjct 17408 GGCTCGAGGAAGTTAAGATTGTTGCTGCCGACGAAGCGCTGCGCCATCGAGACAATGGTC 17467 Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATA--CGCCGTCTGCTCCGCCACGTAGCCCGCCA 117488 ||||| || ||||| || || || || ||| | || || | ||||||||||| | Sbjct 17468 TGCTGGAGACTGGCCTCTCCGTGATGGTAGGCGCTGACT--TCGGAGACGTAGCCCGCAA 17525 Query 117489 GCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGC 117548 |||| || || || || || | ||| ||||||||||| ||| || | | |||||||| Sbjct 17526 GCTGTGCGACTTTGATTTCCTGCTTCATGTTCTTCTTGATGCATGCGAAGAGCACCTTGC 17585 Query 117549 GCTGACTTGGCTTC 117562 |||| | |||||| Sbjct 17586 GCTGGCCGGGCTTC 17599 >seq6339 Length=15978 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||| || | ||||| ||||| ||||| ||| |||||||| Sbjct 777 GTGAAGATGTATCGAGGGCTTGCAGAGTCCTTCCCACCGTGCAGCCTCGTGCCAAACTGC 718 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCA 152140 || ||||| || ||||| ||||||||| ||||||||| |||||||||| Sbjct 717 CCGATGGGCTGCAGCAGGTTCAGGTTGTTGCTGCCCACGAAGTTCTGAGCCA 666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| |||||||| ||||| ||||| || | ||| || || || Sbjct 777 GTGAAGATGTATCGAGGGCTTGCAGAGTCCTTCCCACCGTGCAGCCTCGTGCCAAACTGC 718 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTT 117420 || | |||| || ||||||||||||||| |||||| ||||| ||||||| ||| Sbjct 717 CCGATGGGCTGCAGCAGGTTCAGGTTGTTGCTGCCCACGAAGTTCTGAGCCAGGTT 662 >seq95 Length=3259226 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| || ||||||||||| |||||| ||| | ||||| || || Sbjct 1986262 AGTGAAAATATAGCGAGGACTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 1986203 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | | ||||| | ||||| || |||||||| |||||||||||||| Sbjct 1986202 ACCAATAGGTTGTAGAAGGTTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGAC 1986143 Query 117424 AATCGT 117429 ||| || Sbjct 1986142 AATAGT 1986137 >seq45 Length=4641476 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | | |||||||| || || | ||||||| Sbjct 476400 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 476459 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| || ||||| |||||||||||||| || ||||||||| Sbjct 476460 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCG 476519 Query 74892 AC 74893 || Sbjct 476520 AC 476521 >seq715 Length=106915 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 55808 GACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCG 55867 |||||||| ||||| ||||||||| |||| ||||| | |||||| | | ||| Sbjct 91511 GACCAGTCTCAGTCGCTGAACATCCATATGGTCAATCCCACGTACGCCAAGCTTACGTCG 91452 Query 55868 ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 |||||||| ||||||||||| || || ||||| ||| |||| ||||| || ||||| Sbjct 91451 ATGCACTTCTACGGGTGGAAACGTGGGCTGAAGACAGGTTTGTATTATCTCCGAACCCG 91393 >seq208 Length=1344296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 80161 TGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATC 80220 ||||||||||| |||| |||| ||||||||| ||| ||||||||| || ||||||||| | Sbjct 1055236 TGCTCCCGGTGGGGATCGAACCCACGACTTTCGGCTCATAAGACCGACGCTCTAACCAAC 1055295 Query 80221 TGAGTTACG 80229 |||| |||| Sbjct 1055296 TGAGCTACG 1055304 >seq214 Length=1293776 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||| |||||| || |||||||||||| ||||| || |||||||| || || ||| Sbjct 76633 AGCTGTTTCCTGCTGTGCATGAAGGATGACAGCATCGAAGGGATCTACGACACCCTGAAG 76692 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 |||| |||| |||||||||| ||||||| ||||| Sbjct 76693 CAGTGCGCCCTGATCTCCAAGTCTGCGGGTGGGATCGG 76730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546926187566200