Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1287 187 3e-42 seq6222 161 1e-34 seq479 156 5e-33 seq1 143 3e-29 seq1741 86.0 7e-12 seq214 86.0 7e-12 >seq1287 Length=55868 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | |||||||||||||||||||| ||||| ||| || Sbjct 31145 AATGCAAATTTTCGTGAAGACTTTAACCGGCAAGACTATTACTCTGGAGGTAGAGCCATC 31086 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| ||||||| |||||||| || ||||| || || ||||| ||||| Sbjct 31085 TGATACGATAGAAAATGTGAAGGCGAAAATTCAAGATAAGGAAGGCATCCCTCCTGACCA 31026 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| | |||||||| || || ||||||||||| | | || ||| | |||||||| Sbjct 31025 ACAGCGATTGATTTTTGCGGGAAAACAACTCGAGGACGGAAGAACGCTATCCGACTATAA 30966 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| ||||| ||| | || ||| | || || ||||| Sbjct 30965 CATTCAAAAGGAATCAACTCTCCATTTGGTGTTGAGACTACGTGGTGG 30918 Score = 134 bits (148), Expect = 2e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 |||||||| || || ||||| | || || ||||| || || | ||||| || |||| Sbjct 31600 ATGCAAATTTTCGTGAAGACTTTGACAGGGAAGACGATAACGTTGGAGGTGGAACCGTCA 31541 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | | | || | ||| ||||||| ||||||||||||||||| || ||||| |||||| Sbjct 31540 G---ACACGATCGAGAATGTGAAGGCGAAAATTCAGGACAAGGAAGGCATTCCGCCAGAC 31484 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || || ||||| || || ||||| || || |||| | || ||| | ||||| Sbjct 31483 CAGCAACGGCTTATTTTCGCGGGGAAGCAGCTGGAAGATGGCAGAACACTATCGGACTAC 31424 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||| | || |||||||| ||| | ||||| || |||| | || || ||| Sbjct 31423 AATATTCAGAAGGAATCAACTTTGCATCTGGTGCTGCGGTTGCGTGGAGGA 31373 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || ||||| ||||| |||||||| || || ||||| ||| | Sbjct 31829 AATGCAGATCTTCGTGAAAACGCTAACCGGGAAGACTATCACGCTGGAGGTGGAGCCGTC 31770 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||||| |||||||||||||| |||||||| || || || || Sbjct 31769 GGACACGATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCA 31710 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | || || || || ||||| || || |||| | || ||| | ||||| || Sbjct 31709 GCAGCGCTTGATATTCGCGGGGAAGCAGCTGGAAGATGGCAGAACGCTATCGGACTACAA 31650 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 | || |||||||| || ||||| Sbjct 31649 CATTCAGAAGGAATCTACCCTTCA 31626 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || |||||| | || || || || || || || || || || || Sbjct 31373 AATGCAAATTTTCGTGAAGACGTTGACAGGGAAAACCATCACGCTAGAAGTAGAACCATC 31314 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||| | ||| |||| || || || |||||||| |||||||||||||||||||| Sbjct 31313 AGACTCCATAGAGAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 31254 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | |||||||| || || || |||||||| | | || ||| | ||||| || Sbjct 31253 ACAGCGTTTGATTTTTGCAGGAAAACAGCTCGAGGACGGAAGAACGCTATCGGACTACAA 31194 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || ||||| || || || || || || Sbjct 31193 CATTCAGAAGGAGTCGACGCTCCACCTTGT 31164 >seq6222 Length=16261 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || | || |||||||| || ||||||||||| ||| | || Sbjct 795 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAGT 854 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| ||||| || ||||| || || |||||||| || ||| Sbjct 855 GACACCATAGAGAATGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAG 914 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| ||| ||||| | ||||| || Sbjct 915 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 974 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || || || || ||||||| | ||||| Sbjct 975 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGG 1021 >seq479 Length=216575 Score = 156 bits (172), Expect = 5e-33 Identities = 175/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || ||||| ||||| || Sbjct 29832 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTTGAAGTTGAATCTTCC 29773 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| |||||||| |||||||||||||||||||| ||||| Sbjct 29772 GACACGATCGAAAATGTAAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCCGACCAA 29713 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| || || |||||||| || || | | || || | ||||| || Sbjct 29712 CAGAGGCTTATTTTCGCAGGGAAGCAACTGGAAGACGGCAGGACTCTCTCTGACTACAAC 29653 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT----AGTC-TTGCGTCTTCGCGGTG 27631 |||| |||||||| || |||||||| |||| | |||| ||||||||| Sbjct 29652 ATCCAGAAGGAATCTACCCTTCATCTGGTAAGTCATGGCGT-TTCGCGGTG 29603 >seq1 Length=14292544 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || | ||||| ||| | || Sbjct 9556179 ATGCAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGT 9556120 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| || || ||||| || ||| Sbjct 9556119 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 9556060 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 9556059 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 9556000 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| |||| || | ||||| Sbjct 9555999 ATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGCCTGAGGGGTGG 9555953 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || ||||| ||||| ||| | || Sbjct 9556407 ATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACTCTGGAGGTCGAGCCCAGT 9556348 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || || || || || ||| Sbjct 9556347 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCAG 9556288 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 9556287 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 9556228 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || || |||| || Sbjct 9556227 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCT 9556190 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || | ||||| ||| | | Sbjct 9556635 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCAGC 9556576 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| || || || || || ||| Sbjct 9556575 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAG 9556516 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 9556515 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 9556456 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| ||| |||| || Sbjct 9556455 ATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGCCT 9556418 >seq1741 Length=44818 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 |||||| ||||| |||||||||||| | | ||| ||| ||||||||||| || | Sbjct 17607 GACGGCTGGAAGCCCGGCCAGCGCAAGGTGCTCTTCGCATGCATCAAGAAGAACATGAAG 17548 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 || || || || || ||||| |||||||||| | || | ||||| || ||| Sbjct 17547 CAGGAAATCAAAGTCGCACAGCTTGCGGGCTACGTCTCCGAAGTCAGCGCCTACCATCAC 17488 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 || ||||| |||||| ||||||||| | || ||| ||| ||||| || Sbjct 17487 GGAGAGGCCAGTCTCCAGCAGACCATTGTCTCGATGGCGCAGCGCTTCGTCGGCAGCAAC 17428 Query 32164 AACCTGAACTTACTCGAGCC 32183 || || ||||| |||||||| Sbjct 17427 AATCTTAACTTCCTCGAGCC 17408 >seq214 Length=1293776 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACA-CGA-CTCCA 80632 ||||| ||| || |||| || ||||| || ||| || || |||||||| | | || | Sbjct 80875 GGAGAACCCTCGTACGTTTCATACGGTCCTTCCTGCTCAGCAAGCTCACAGCTAGCTTCC 80816 Query 80633 TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGT 80692 ||| ||| | ||| ||| |||||| | || ||||| | |||| ||| Sbjct 80815 AAAGCACCG--TAATAGATGGTCTCAAATATCTGCTGGTTCAGGAGCTGGGCCTCGGGGC 80758 Query 80693 CGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGA 80752 ||||| | | | ||| | ||||| |||||||||||||||| ||||||||| ||| Sbjct 80757 TTTCGAAGGGATACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGA 80698 Query 80753 TCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCT 80785 | |||||||| || |||| || ||||| |||| Sbjct 80697 TGGGGCGGTGCCGTCTGTTGGAGCGCTCCGCCT 80665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570008356483280