Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq30 336 3e-87 >seq30 Length=5416276 Score = 336 bits (372), Expect = 3e-87 Identities = 676/997 (68%), Gaps = 28/997 (3%) Strand=Plus/Minus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTC-GTGAAAGACAGGGGGTATCTCGT 13666 || ||| ||||||||||| ||||||| |||| | || || | || | || ||| Sbjct 4399002 GAGTACCTGAACATGACGAAGGACTGCGGCAGCTTCAGGGAGAGCC-GGCGCTACGTCGA 4398944 Query 13667 GAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCA 13726 | || |||||| ||| |||| || || |||||||||||||| || ||||||||||| Sbjct 4398943 GTTCCCGCTGAGCGAGGAGGAGGCCGGCTTCCCCATCGCCTACTCCATGGTGATCCACCA 4398884 Query 13727 CAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTG 13786 ||||||||||||||||||||| |||||| | || ||||||||||||||||| ||||||| Sbjct 4398883 CAAGATCGAGATGTTCGAGCGGCTCCTGCGCTCCGTCTACGCCCCGCAGAACGTCTACTG 4398824 Query 13787 CGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAG 13846 ||||||||||||| ||||| | || || ||| | || ||| |||||||||| Sbjct 4398823 CGTCCACGTGGACGCCAAGGCTCCCGCCGCCTTCCAGCAGGCCGTGCGGGCCATCGCCGC 4398764 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAG 13906 |||||||| ||||| | ||||| ||| ||| | ||||||||||| ||| ||| Sbjct 4398763 CTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTGTACGCCTCGTGGTC 4398704 Query 13907 TCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAG 13966 || ||||||||||||||| ||||||| ||||||| | |||||| ||| | Sbjct 4398703 CCGGCTGCAGGCCGACCTCAACTGCATGCGGGACCTGCTGCGCAGCCCCGTGCCCTGGCG 4398644 Query 13967 GTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 ||| |||||||| |||||| | ||||||||| ||||||||||| |||||| || || Sbjct 4398643 CTACGTGCTCAACACGTGCGGCACGGACTTCCCCATCAAGACCAACGCGGAGATGGTCCG 4398584 Query 14027 GGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA 14086 |||||| ||| ||| || ||||| | ||||| |||| | | | |||| Sbjct 4398583 CGCGCTGCAGGTGCTGCAGGGGCAGAACAGCATGGAGTCCGAGAGGCCGACGGCGTACAA 4398524 Query 14087 GCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCG-GCGGCGTGGTGGTCA------ 14139 || | | || | ||||| || ||| || | || | ||| ||| Sbjct 4398523 GCAGGAGCG---CTGGAAGTACCA--------CCACCGAGTGGAGCGGT--TCATCTCGC 4398477 Query 14140 ACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTT 14199 ||| | || | ||| | || ||||||||| | ||||| || |||| | ||| | Sbjct 4398476 GCACGGCCACGGCGAAGCCGCCTCCGCCGCTCCGCTCGCCCATGTTCACGGGCAGCGCCT 4398417 Query 14200 ACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC 14259 || | |||| ||| |||| |||||| ||| || ||||| ||| | | | Sbjct 4398416 ACATCGCGGCCACGCGGGCCTTCGTGCGGCACGTGCTGGAGGACCCCACGGCGCAGCGGT 4398357 Query 14260 TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGA 14319 || | | ||| | ||||||| |||||||||||||||||| |||||||||| || | Sbjct 4398356 TCCTCGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGGGCCACGCTGAACC 4398297 Query 14320 GAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGT 14379 | | ||| |||||| | | ||| ||| ||||| | | || |||||| Sbjct 4398296 GCGCGCCCGGCGTGCCCGGCGCCGTGCCCCACAACGACAAGTTCCAGCTGTCCGACATGA 4398237 Query 14380 GGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCC 14439 || | | | | ||||||||||| ||| || || || | | || || | Sbjct 4398236 ACGCGCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGCGACACGAGCCGCGGAGCGC 4398177 Query 14440 TGTACCCGCCTTGCGACGGCATCCACGTCCA---CGCCATCTGCATCTTCGGGTCCGGCG 14496 |||||||| ||| ||| || | |||| |||| ||||| | | |||| |||| | Sbjct 4398176 CCTACCCGCCCTGCACCGG---CCGCTTCCAGCGCGCCGTCTGCGTGTACGGGGCCGGGG 4398120 Query 14497 ACGTGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGG 14556 ||||| ||| || | | | ||||| || |||||||||||||||| ||| | Sbjct 4398119 ACGTGGCCTGGATGCTGCGGCAGCACCACCTCTTGGCCAACAAGTTCGACGCCGAAGTAG 4398060 Query 14557 ACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCG 14593 |||| |||||| | || || || || || |||| Sbjct 4398059 ACGACGCCGCCGTCCAGTGCCTCGAGCAGCACCTGCG 4398023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658390323485440