Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1287 120 2e-22 seq6222 96.9 2e-15 seq1 84.2 1e-11 >seq1287 Length=55868 Score = 120 bits (132), Expect = 2e-22 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 |||||||||||||||||| ||||||||||||||||| || || || |||| |||| Sbjct 30932 CAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGATAGCGTTCTTCCGTC 30991 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || |||||||| || ||||| || || ||||||||||| || || | || ||||| || Sbjct 30992 CTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCCTTATC 31051 Query 34614 TGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC--TTCGCTCTCCACTTCCACGGTTAT 34670 | ||| ||| | || || | || || || | ||||| || |||| || || Sbjct 31052 T-TGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCT--ACCTCCAGAGTAAT 31108 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| || ||||| ||||| ||||| Sbjct 31109 AGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 Score = 107 bits (118), Expect = 1e-18 Identities = 150/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| |||||||| || || || || |||| |||| || || ||| Sbjct 31170 TGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCGTCCTCGAGCTGT 31229 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || |||||||||||||| || || | |||||| ||||| |||| || Sbjct 31230 TTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATC-TT 31288 Query 34624 TGTTTTAACGAT-AAAATTGTGTCT--TCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 || ||| || | || | |||| | | ||| ||||| | || || ||||| || Sbjct 31289 TGCTTTCACATTCTCTATGGAGTCTGATGGTTCT--ACTTCTAGCGTGATGGTTTTCCCT 31346 Query 34681 GTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| ||||| ||||| Sbjct 31347 GTCAACGTCTTCACGAAAATTTGCAT 31372 >seq6222 Length=16261 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||| ||||| || || ||| |||||| || ||||| || || || Sbjct 1250 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1191 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| || || || || Sbjct 1190 CAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 1131 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || || |||||| |||||| | || ||| | ||| ||||| | ||| | Sbjct 1130 AATGCCTTCTTTGTCTTGGATCTTG-GCCTTCACGTTTTCAATGGTGTCACTGGGCTCAA 1072 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || || || | ||||||||||| ||||||||| Sbjct 1071 CTTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 1022 >seq1 Length=14292544 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| || | ||| || ||| |||||| || ||||| || || || Sbjct 9556408 GCCTCCCCTCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 9556467 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| || || || || Sbjct 9556468 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 9556527 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | || |||||||| |||||| | || ||| | || ||||| | ||| | Sbjct 9556528 GATGCCTTCCTTGTCCTGGATCTTG-GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGA 9556586 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | |||| ||| || || || ||||| | || ||||| || |||||||||||| Sbjct 9556587 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTTG 9556639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314567082387977