Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1287 149 5e-31 seq6222 140 3e-28 seq479 122 8e-23 >seq1287 Length=55868 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||| ||| |||| || || || ||||| ||||| Sbjct 31828 ATGCAGATCTTCGTGAAAACGCTAACCGGGAAGACTATCACGCTGGAGGTGGAGCCGTCG 31769 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || |||||||| |||||||| || || || || ||||| Sbjct 31768 GACACGATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 31709 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || |||| ||| || || || ||||||| | || | || || |||||| Sbjct 31708 CAGCGCTTGATATTCGCGGGGAAGCAGCTGGAAGATGGCAGAACGCTATCGGACTACAAC 31649 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || ||| | || |||||| | || | |||||||||| Sbjct 31648 ATTCAGAAGGAATCTACCCTTCACTTGGTTCTCCGCCTAAGGGGTGGCAT 31599 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| | ||||||||| |||||||||| || || || || || Sbjct 31144 ATGCAAATTTTCGTGAAGACTTTAACCGGCAAGACTATTACTCTGGAGGTAGAGCCATCT 31085 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || ||||||||||| || |||||||| || || || ||| Sbjct 31084 GATACGATAGAAAATGTGAAGGCGAAAATTCAAGATAAGGAAGGCATCCCTCCTGACCAA 31025 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || |||||| | || ||| | || | ||||| || ||| Sbjct 31024 CAGCGATTGATTTTTGCGGGAAAACAACTCGAGGACGGAAGAACGCTATCCGACTATAAC 30965 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| || || | |||||||| ||| | | || ||||| Sbjct 30964 ATTCAAAAGGAATCAACTCTCCATTTGGTGTTGAGACTACGTGGTGG 30918 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||| |||| || ||| | || || | || ||||||||||| Sbjct 31601 CATGCAAATTTTCGTGAAGACTTTGACAGGGAAGACGATAACGTTGGAGGTGGAACCGTC 31542 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || || |||||||| ||||| |||||||| || || || || Sbjct 31541 AGACACGATCGAGAATGTGAAGGCGAAAATTCAGGACAAGGAAGGCATTCCGCCAGACCA 31482 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || | || | ||| || || || ||||||| | || | || || ||||| Sbjct 31481 GCAACGGCTTATTTTCGCGGGGAAGCAGCTGGAAGATGGCAGAACACTATCGGACTACAA 31422 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || || ||| |||| |||| ||||| || || || Sbjct 31421 TATTCAGAAGGAATCAACTTTGCATCTGGTGCTGCGGTTGCGTGGAGGAAT 31371 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || || | || || || ||||| ||||| || Sbjct 31372 ATGCAAATTTTCGTGAAGACGTTGACAGGGAAAACCATCACGCTAGAAGTAGAACCATCA 31313 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || |||| || ||| ||| || || |||||||| || || || || || ||| Sbjct 31312 GACTCCATAGAGAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCAA 31253 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || ||||| | || ||| | || | || || |||||| Sbjct 31252 CAGCGTTTGATTTTTGCAGGAAAACAGCTCGAGGACGGAAGAACGCTATCGGACTACAAC 31193 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || | || | || |||||||| || || Sbjct 31192 ATTCAGAAGGAGTCGACGCTCCACCTTGTACTTCGATTGCGGGGAGGAAT 31143 >seq6222 Length=16261 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| ||||| |||||| | || || |||||||| || || Sbjct 1022 CATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAAGTTGAGCCCAG 1081 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || || ||||||||||||||||| || |||||||| Sbjct 1082 TGACACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 1141 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| || || | ||||| ||||| Sbjct 1142 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACGCTGTCCGACTACAA 1201 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| || |||||||| ||| | || |||| ||||| || |||| |||| Sbjct 1202 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGCA 1251 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || ||||| || || || Sbjct 338 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCTAG 397 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || || || || ||||||||||||||||| || |||||||| Sbjct 398 CGACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 457 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || |||||||| | ||| | || || ||||| Sbjct 458 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 517 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || ||| | || |||| ||||| || |||| ||||| Sbjct 518 CATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGCAT 568 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || || || || || || Sbjct 566 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGAGCCCAG 625 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || || ||||||||||||||||| || |||||||| Sbjct 626 TGACACCATTGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 685 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||||||| | ||| | || || ||||| Sbjct 686 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 745 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || |||| ||||| || |||| ||||| Sbjct 746 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGCAT 796 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| |||| |||||| | || |||||||| || || || Sbjct 794 CATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAG 853 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || ||||| ||||||||||||||||| || || ||||| Sbjct 854 TGACACCATAGAGAATGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCA 913 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| || ||| | ||||| ||||| Sbjct 914 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 973 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || ||| | || |||| ||||| || | |||||||| Sbjct 974 CATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGGCAT 1024 >seq479 Length=216575 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 26980 TATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGG 27039 ||| | | |||||||| || || || || || || || ||| | || || |||||||| | Sbjct 29840 TATCCACGATGCAGATCTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTTGAAGTTG 29781 Query 27040 AACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCAC 27099 || | |||||| |||| || | || || |||||||||||||| || || || || | Sbjct 29780 AATCTTCCGACACGATCGAAAATGTAAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTC 29721 Query 27100 CCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG 27159 |||| |||||| | | || | ||| || || ||| |||||||| | ||| | || | Sbjct 29720 CCGACCAACAGAGGCTTATTTTCGCAGGGAAGCAACTGGAAGACGGCAGGACTCTCTCTG 29661 Query 27160 ATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 | |||||||| || ||||| || ||| | ||| |||| Sbjct 29660 ACTACAACATCCAGAAGGAATCTACCCTTCATCTGGT 29624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434688061778880