Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq33 91.5 1e-13 >seq33 Length=5235935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || |||||||| ||||| || Sbjct 587776 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGCCCCAAGTCCCCCTCTTCT 587835 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | |||||| | || ||||| || || || ||||| | ||| ||||| ||||| Sbjct 587836 CTGGTGTAAAACCCCTGTTTATCCAGGAACTCACGTGACCCATTAGCATCCCAAATCTTT 587895 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | |||||||| |||| Sbjct 587896 ACACCCTTTGCAGAGAGCTCTTTGG 587920 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||| || ||||| ||||| ||| | ||||| || || || | Sbjct 587920 CCAAAGAGCTCTCTGCAAAGGGTGTAAAGATTTGGGATGCTAATGGGTCACGTGAGTTCC 587861 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| || | |||||| | | || ||||| |||||||| || || || || |||| Sbjct 587860 TGGATAAACAGGGGTTTTACACCAGAGAAGAGGGGGACTTGGGGCCAGTTTATGGTTTCC 587801 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || || || Sbjct 587800 AGTGGAGGCACTTTGGAGCAGAATA 587776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448024994629680