Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6222 107 1e-18 seq1287 96.9 2e-15 seq479 95.1 8e-15 >seq6222 Length=16261 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || ||||| || |||||||| ||| Sbjct 1023 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAAGTTGAGCCCAGT 1082 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||||||||| | || || ||||| Sbjct 1083 GACACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 1142 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | ||||| | ||| |||||| Sbjct 1143 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACGCTGTCCGACTACAAC 1202 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1203 ATCCAGAAGGAGTCCAC 1219 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||||| || || ||| Sbjct 567 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGAGCCCAGT 626 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| || || ||||||||||| | || || ||||| Sbjct 627 GACACCATTGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 686 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||||| ||||| | || |||||| Sbjct 687 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 746 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 747 ATCCAGAAGGAGTCCAC 763 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||| | || || || || |||||||| || || || ||| Sbjct 795 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAGT 854 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | |||| | ||||||||||| | || || ||||| Sbjct 855 GACACCATAGAGAATGTGAAGGCCAAAA-TCCAAGACAAAGAAGGCATTCCTCCGGATCA 913 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||| | ||||| | ||| ||||| Sbjct 914 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 973 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 974 CATCCAGAAAGAATCCAC 991 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| |||||||| || || || ||||| || || || || ||||| || || || || Sbjct 333 TTAAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAG 392 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | ||||| | || ||| | || | || | | ||||||||||| | || || Sbjct 393 CCTAGCGACACCATAGAGAATGTGAAGGCCAAGA-TCCAAGACAAAGAAGGCATTCCTCC 451 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 ||||| ||| | | || || || ||||| || |||||||||| ||||| | || Sbjct 452 CGATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGA 511 Query 23784 TTACAACATACAAAAAGAGTCCAC 23807 |||||||| || ||||| ||||| Sbjct 512 CTACAACATCCAGAAAGAATCCAC 535 >seq1287 Length=55868 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| || || | || || ||||| ||||| || ||||| || | | Sbjct 31373 AATGCAAATTTTCGTGAAGACGTTGACAGGGAAAACCATCACGCTAGAAGTAGAACCATC 31314 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| | | || ||| | ||| |||| | | |||||||| || | || ||||| | Sbjct 31313 AGACTCCATAGAGAATGTGAAAGCAAAGA-TCCAGGACAAAGAGGGAATTCCTCCAGACC 31255 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||||| || ||||| || ||||| || || |||| | | || || || |||| Sbjct 31254 AACAGCGTTTGATTTTTGCAGGAAAACAGCTCGAGGACGGAAGAACGCTATCGGACTACA 31195 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||| || | || | || | | ||||| |||||| Sbjct 31194 ACATTCAGAAGGAGTCGACGCTCCACCTTGTACTTCGATTGCGGGGAGGA 31145 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| ||||| || || || || || ||||| || || || || | Sbjct 31831 AAAATGCAGATCTTCGTGAAAACGCTAACCGGGAAGACTATCACGCTGGAGGTGGAGCCG 31772 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| |||| | | || |||||| |||||||| || | || || ||| Sbjct 31771 TCGGACACGATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGGAATCCCCCCTGAT 31712 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| || ||||| || || || || |||||||| | | || || || ||| Sbjct 31711 CAGCAGCGCTTGATATTCGCGGGGAAGCAGCTGGAAGATGGCAGAACGCTATCGGACTAC 31652 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| || || || || || | || || ||| Sbjct 31651 AACATTCAGAAGGAATCTACCCTTCACTTGGTT 31619 >seq479 Length=216575 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || |||||||| || | Sbjct 29832 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTTGAAGTTGAATCTTCC 29773 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| |||| |||||| ||||| || || | || || || ||| Sbjct 29772 GACACGATCGAAAATGTAAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCCGACCAA 29713 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || || || ||||||||||||| | ||| | || |||||| Sbjct 29712 CAGAGGCTTATTTTCGCAGGGAAGCAACTGGAAGACGGCAGGACTCTCTCTGACTACAAC 29653 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 29652 ATCCAGAAGGAATCTAC 29636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337835061243452