Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1287 178 3e-39 seq6222 145 2e-29 seq1 132 1e-25 seq479 125 2e-23 >seq1287 Length=55868 Score = 178 bits (196), Expect = 3e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || | ||| ||||| || || | |||||| || | | ||||| ||||| Sbjct 31388 CAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCGATAGTGTTCTGCCATC 31447 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 31448 TTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCGGAATGCCTTCCTTGTC 31507 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || || ||||||| ||||| |||||||| | |||||| || ||||| ||||| Sbjct 31508 CTGAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCCACCTCCAACGTTATCGT 31567 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || |||||||| || | ||| | |||||| Sbjct 31568 CTTCCCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| || || || || || | ||||| || | | ||||| || || Sbjct 31161 AGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCGTCC 31220 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || || || | || |||||||| || ||||| || || ||||| Sbjct 31221 TCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTGTCC 31280 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| |||||| || |||| |||||| | ||| || |||| |||||| || Sbjct 31281 TGGATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTACTTCTAGCGTGATGGTT 31340 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | ||| | ||||||| Sbjct 31341 TTCCCTGTCAACGTCTTCACGAAAATTTGCATT 31373 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || ||||| || || | ||||| || | | ||||| |||||| Sbjct 31617 AGAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTGCCATCT 31676 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| ||||| || | || || || || || || || || || ||||| Sbjct 31677 TCCAGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGGGGGATTCCCTCTTTGTCC 31736 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || |||||| || || ||||| || | ||||| || | |||||| ||| Sbjct 31737 TGAATTTTCGCCTTCACGTTCTCAATCGTGTCCGACGGCTCCACCTCCAGCGTGATAGTC 31796 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || | ||||| | ||| | |||||||| Sbjct 31797 TTCCCGGTTAGCGTTTTCACGAAGATCTGCATTTT 31831 >seq6222 Length=16261 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||||||||| |||| ||||| |||| || || | ||||| Sbjct 1007 CAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 948 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||| ||||| Sbjct 947 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCTTTGTC 888 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||| || ||||||| || |||||||| || || || || | ||||| || Sbjct 887 TTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACCTCAAGAGTGATTGT 828 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||| ||||| | ||| | ||||| Sbjct 827 CTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 795 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||||||||| |||| ||||| || | || || | ||| || Sbjct 551 CAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 492 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || || ||||| ||||| ||||| ||||| Sbjct 491 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 432 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| || |||||||| | || || || | ||||| || Sbjct 431 TTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGATGGT 372 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 371 CTTGCCAGTCA 361 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 1235 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATC 1176 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || ||||| ||||| ||||| ||||| Sbjct 1175 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 1116 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| |||||| ||| |||||||| || || || || | ||||| || Sbjct 1115 TTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGT 1056 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| |||| ||||| Sbjct 1055 CTTGCCAGTCAGGGTTTT 1038 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| || || |||| ||||| || | || || | ||| || Sbjct 779 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 720 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || ||||| ||||| ||||| ||||| Sbjct 719 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 660 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||| |||||||| || || || || | |||||| || Sbjct 659 TTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGT 600 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 599 CTTGCCAGTCA 589 >seq1 Length=14292544 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || || || ||||| || || |||| ||||| |||| || || | |||||| Sbjct 9555967 CAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 9556026 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| |||||||| || || | || || ||||| || || ||||||||||| Sbjct 9556027 TTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTC 9556086 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||||||||||| || ||||| || || ||||| || Sbjct 9556087 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGT 9556146 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || | || || | ||| | ||||| Sbjct 9556147 CTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 9556179 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || || || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 9556423 CAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 9556482 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || ||||| || || ||||||||||| Sbjct 9556483 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTC 9556542 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||||||||||| || || || || || ||||| || Sbjct 9556543 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAAGGTGATGGT 9556602 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| || | || || | ||| | ||||| || Sbjct 9556603 CTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTT 9556638 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| || || |||| ||||| |||| || || | |||||| Sbjct 9556195 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 9556254 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| || || || | || || || || || || ||||||||||| Sbjct 9556255 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTC 9556314 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||| || || || || | ||||| || Sbjct 9556315 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGAGTGATGGT 9556374 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || ||||| || || | ||| | ||||| Sbjct 9556375 CTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 9556407 >seq479 Length=216575 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || || || || || ||||| || |||| ||||| || | | ||| || || ||||| Sbjct 29624 ACCAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTCC 29683 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || |||||||| ||||| ||||| | ||||||||||| ||||| || ||||||||||| Sbjct 29684 AGTTGCTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTGA 29743 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 || || ||| ||| |||||| ||||| || | ||| || || | ||||| ||||| Sbjct 29744 ATTTTGGCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGATGGTCTTC 29803 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || | || || | ||| | ||||| Sbjct 29804 CCTGTGAGGGTCTTGACGAAGATCTGCAT 29832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191883831084086